Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1487 ATGGAAGCCTTTAGCCTTCTCCTGTTATGCTTCTCTCTGCTGAATTTAATAGCATTTTGTGCTCCAAGAGACACAATTAACACACTGCAATCTATCGGTGATGGTGAGACATTAGTTTCAGCAGATGAAACCTTTGCATTGGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTTGGAATTTGGTATAACAAAGATCCAACAAAGGCAATAGTATGGGTTGCAAACAGAGAAAAACCCCTCACTGACTCCTCAGGGGTTTTGAAGGTCAATACCACCGGAATTCTAGTCCTTCTTGATAGTAATAATAGTCTTATCTGGTCATCCAACACGACAGGATCGGCACGAAATCCGGTTGCAAAGCTTTTGAATTCTGGAAATTTTGTTGTGCAGGATGACAGCAATAGCGACACGGAAGATTTTGTGTGGCAAAGTTTTGACTATCCAGGCGACACAATCTTGCCTGGACAGAAGTTGGGAAGAAACTTTGCTACAGGACTAAATCGGAGGACAATATCATGGAAAAGCTCTGATGATCCTTCTCCAGGTAGCTTTAGCTATCAAGTCGAGATTGATGGATATCCGCAATTAGTATTAAGAGAAGGCACAACAAAAAGATTTCGTTTCGGATCATGGAATGGTATTCAGTTTAGTGGGGGACCACAGTTGAAAAATGACTCTGTATTTAGATTTAGCATAATTTCTGATGAGGAAGAAGTATACAGTGTATTTTGGCTTGTTGATAGTTCAGTGCATCAAAGGGTTCAGATAACATCGGACGGATTCTGCCAGCGGGCGAGTTGGAGTGGTGGAAATACAGGTTGGATCAAAATTTCGCACTTACCGGTGGATTACTGTGATTACTATGGAAACTGTGGAGCATATGCTAGTTGTGATACAAACAGGTTTCCCATGTGTAATTGCTTGGATGGATTTGTGCAGAATACAACTGATTCATCAAGTGGTTGTGTTAGGAGAACTTCATTGAGTTGCAATCATTCAGATGGGTTTGTGAAGTTTTCGGGGCTAAAATTACCAGACACTGAAGGGACACGGTTTAATAGAAGCATGAGACTTGAGGATTGTAGGATCTTGTGCTGGAACGATTGCTCTTGTATGGCTTATGCAGCTTTGGATGTCAGCAAAGGGCCTAATGGTTGTTTACTTTGGTTTGGTAATCTCATAGATATGAAAGTGATGAGTGCATCTGATGAAGATATTTATATAAAGATGGCAGGGATAGAAGTAGAAGCAATTGAACAAAATAGATCAACGAAGTCCAAGAAACGGAAGCTAAAGATTATCATTGCCGTAAGCTGTGTGTTATCTTTTGGAATTTTGATCCTATGCTTGGCCTTCATCATCTATGGATGGAAGAAGCCTCACAAAGGAAAGATAAAAGAAGAAACAGAATCAGGTGCAATAAATAGTCACCATGATGAGGATGATCTGGAACTGCCCTTATTTGATATGTGCACAATTACTTCTGCAACAAGTAATTTTTCAAGTGACAATATACTAGGGACAGGTGGTTTTGGATCAGTTTATAAGGGTATCTTGGAAAATGGACGAGAAATAGCTGTCAAGAGACTTTCACAAAATTCAAGCCAAGGACTCCAAGAGTTCAAAAATGAAGTTATGCATATTGCCAAACTTCAGCACAGAAATTTAGTGAAGCTATTAGGGTATTGCATTCAAGCAGGGGAGAGAATATTGATTTATGAATTTATGCGCAACAAAAGCTTGGACTTCTTTATATTTGATTGTGAGAAGGGAAAGCTTCTAGACTGGCCAAAGCGTTTTCTTATTATTAATGGAATTGTTAGGGGTCTTCTCTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTTAAGGCTGGAAATATTTTGTTAGATGACGAATTGAATCCTAGAATTTCAGACTTTGGACTAGCAAGAAGCTTTGTAGGAAATGAAAACCAAGCAAATACAAGGCATATTGTTGGAACTTACGGCTATCTGTCACCGGAGTACATAGTTGATGGGATATACTCAACAAAATCTGATGTCTACAGCTTCGGAGTACTGGTGTTAGAGATAGTTAGTGGGAAGAGAAATAGAGGATTCATCCATATTGATCACAATTTTAATCTGCTTGGGCATGCATGGACACTTTTTTCAGAAGGCAAGTGCTTACAAATAGTTGATCCATCTATCAAAGACTCTATTCATTTGCCAGAAGTCCTAAGATCAATTCATGTTAGTTTGCTATGCGTGCAACGAAATTCAGAGGACCGGCCAAGCATGTCGTGTGTGCTTACGATGCTGAGTAGTGAATGGGCATTGCCTCAGCCAAAGAAGCCAGGATTCTTTATTGAGAGAGATGTGGTTGGTAACCGTTCTTCATCAAGCAACAATAAACTACTATCTGTTAATAATCTGACAGTTACTCAGGTCTGTCCCCGATAG 2460 0.3963 MEAFSLLLLCFSLLNLIAFCAPRDTINTLQSIGDGETLVSADETFALGFFSPGTSKNRYVGIWYNKDPTKAIVWVANREKPLTDSSGVLKVNTTGILVLLDSNNSLIWSSNTTGSARNPVAKLLNSGNFVVQDDSNSDTEDFVWQSFDYPGDTILPGQKLGRNFATGLNRRTISWKSSDDPSPGSFSYQVEIDGYPQLVLREGTTKRFRFGSWNGIQFSGGPQLKNDSVFRFSIISDEEEVYSVFWLVDSSVHQRVQITSDGFCQRASWSGGNTGWIKISHLPVDYCDYYGNCGAYASCDTNRFPMCNCLDGFVQNTTDSSSGCVRRTSLSCNHSDGFVKFSGLKLPDTEGTRFNRSMRLEDCRILCWNDCSCMAYAALDVSKGPNGCLLWFGNLIDMKVMSASDEDIYIKMAGIEVEAIEQNRSTKSKKRKLKIIIAVSCVLSFGILILCLAFIIYGWKKPHKGKIKEETESGAINSHHDEDDLELPLFDMCTITSATSNFSSDNILGTGGFGSVYKGILENGREIAVKRLSQNSSQGLQEFKNEVMHIAKLQHRNLVKLLGYCIQAGERILIYEFMRNKSLDFFIFDCEKGKLLDWPKRFLIINGIVRGLLYLHQDSRHRIVHRDLKAGNILLDDELNPRISDFGLARSFVGNENQANTRHIVGTYGYLSPEYIVDGIYSTKSDVYSFGVLVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFSEGKCLQIVDPSIKDSIHLPEVLRSIHVSLLCVQRNSEDRPSMSCVLTMLSSEWALPQPKKPGFFIERDVVGNRSSSSNNKLLSVNNLTVTQVCPR* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1487 819 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Amo08g1487 819 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Amo08g1487 819 PANTHER - 11 814 - -
Amo08g1487 819 CDD STKc_IRAK 508 773 - -
Amo08g1487 819 SMART ntp_6 333 412 IPR003609 -
Amo08g1487 819 CDD PAN_AP_plant 328 413 - -
Amo08g1487 819 CDD B_lectin 30 150 IPR001480 -
Amo08g1487 819 Pfam D-mannose binding lectin 72 176 IPR001480 -
Amo08g1487 819 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 814 - -
Amo08g1487 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Amo08g1487 819 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Amo08g1487 819 SMART blect_4 29 150 IPR001480 -
Amo08g1487 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Amo08g1487 819 Pfam PAN-like domain 332 398 IPR003609 -
Amo08g1487 819 Pfam Domain of unknown function (DUF3403) 774 819 IPR021820 GO:0004674
Amo08g1487 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Amo08g1487 819 SMART serkin_6 502 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1487 819 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Amo08g1487 819 ProSiteProfiles Protein kinase domain profile. 502 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1487 819 Pfam Protein kinase domain 504 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1487 819 Gene3D Phosphorylase Kinase; domain 1 476 577 - -
Amo08g1487 819 Gene3D - 19 147 IPR036426 -
Amo08g1487 819 Gene3D Hepatocyte Growth Factor 329 410 - -
Amo08g1487 819 SUPERFAMILY Protein kinase-like (PK-like) 487 773 IPR011009 -
Amo08g1487 819 ProSiteProfiles PAN/Apple domain profile. 332 413 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1487 Amo-Chr8 24334050 24338088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1487 446 819 Receptor kinase-like Gene Family AT3G45860 50.909 2.70e-120 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1487 Pkinase 9.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1487 - - adu:107462379 1646.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1364 18 24952637 24956802 Amo08g1487 08 24334050 24338088 hybridization
Amo13g2244 13 38296506 38300261 Amo08g1487 08 24334050 24338088 PCT