Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1482 ATGGAAAGGTTTCCTTTGTTTCTATTGTGCTTCTCATTGATGCACGATGCTGCCATTTCCAGTACAATACAAAGCATTAGTACTACACAGTCCCTGACTGATGGTGACACCATGGTTTCAGCCGGTGGAACCTTTGCAGTTGGATTCTTAAGTATTCCAGAAGGTTCCAAGAACCGTTACCTCGGGATATGGTACAATAAAGTGCCATCTAGAACAGTACCATGGATTGCCAATAGAAACGCTCCACTTAATGACTCGTCCGGGGTCTTGAAGATCACTGCCAATGGAACTCTTGCTCTTCATACTCATAACGACACCATCATTTGGCATTCCAACTCATCAGGAATCGCGCAGCGACCGGTTGCAGTGCTTTTGGATTCAGGGAACCTGGTTGTGAAGGAAGATGGGAGCAATGATGATGATTTGAAGAGTTTCATTTGGCAGAGTTTTGATTACCCTTATGACACGCTACTGCCAGGGATGAAACTGGGAAGTGACTTAACTACAGGCCTTACAAGGTACCTAACATCACCGATTAGCTCTGATGATCCTTCTGAAGGTAGCTATACTTTGCAGCTTGATATTGTTGGATATCCACAATTTTGTATAAGAAATGGCGAATCCAGGACATATTGTGCTGGACCTTGGAACGGTGTTCGGTTCGGCGGAATTCCCCAGTTAAAACATAATACTATATACACCTATTACTTTGTTTACAACAAGGAAGAGATATATTACTCATATGAGCTTGAGAATAGCGCTGTATATTCAAGGTTTGTGCTAACCGCAGACGGATCAATGATTCGTTATGTGTGGAGTGTTACGAATAAGAGTTGGAGTGTCTATCTAACATTACCAACTGATATCTGTGATGATTATGGTAAATGTGGAGCATATGGTATCTGTAATGTAGCCAATTCCCCTGTATGTGGTTGCTTATTGACAGGATTTGAACCTAAAGTCCCTGAAGAATGGAATCAGACGGATTGGTCTGATGGTTGTGTTCGAATCAATAAATTGAATTGCCAGGATGATGGATTTGTACAGTTGTCTGGTTTGAAGTTACCAAACACACAAAGAGCATCAGGGTTAAATAATAGCATGAGTCTTGAGGAGTGTGCTAATTTATGCATGAAGAATTGTTCCTGCACGGCTTATGCTTCCTTGGATATCAGGAATGGAGGAAGCGGGTGTTTATTCTGGTATGATGAGCTGATAGATATTAGAGTTCTGAGTGATCCACAGCAAGATCTTTTTGTCAGAATGTCAAGGAAAGATATAGATGAAATTATGAAGTCAAAACATAAATCCAAGAACAAGAAGGTGCTGATTATTGCTTTCAGCTCAGTCATATCGGTAGGAATTTTGATCCTATGCCTATCCTTCATCGTATATAGAAGAAAGAAGAACAAGATAAACTATAGAAGCATGAGACACAATACAGAAAGATATGCACATGCAATAGAAGACCAGGAGGAAGACCTTGATCTACCATTGTTTGATATGGCTACACTTATTTCTGCAACCAATAACTTCTCCACCAATAAAATATTAGGAAAAGGTGGTTATGGAACTGTTTATCAGGGTACACTGAAAGATGGAAGAGAAATAGCTGTTAAGAGGCTCTCAGAAAATTCTAGACAAGGTCTTCAGGAGTTCAAAAGTGAAGTGATGAATGTAGTCAAACTTCAGCACAGGAATTTGGTGAAGCTTCTAGGGTGTTGCATTCAAGCAGAAGAAAGGATGCTGATCTATGAGTTTATGCCAAATAAAAGCTTGGACTACTTCATATTTGATAAAGAGAGAAGCACGCAACTACTTTGGCCTCAGCGTTTCCTTATTATTGTTGGGATTGCACGGGGTGTTCTCTATCTCCATCAAGATTCAAGACATAGAATAGTTCACAGAGATCTCAAGGCTAGCAATGTTCTACTAGATGACGAAATGAACGCCAAAATCTCTGATTTTGGACTAGCCAGAAGCTTTAAAGGAAATGAAAATGAAGCAAACACAACAAGAGTTGTTGGAACTTATGGCTATCTATCTCCAGAGTACCTAATTGATGGAATTTTCTCAACAAAGTCTGATGTTTATAGCTTTGGTGTGCTTGTATTAGAGATAGTAAGTGGAAAAAGAAATAGAGGGTTCAGCGATAAAAATCATCGCTTTAATCTTCTCGGACATGTATGGACACTCTTCATGGATGGTAATTGTTCAGAAATAATCGATCCGTCCATCAGAAATTCGTCCGAATTATCTGGAGTCATAAGAGTACTTCATGTGGGTCTACTTTGTGTTCAACAGAATCCAGAAGACAGGCCAAGCATGGCACATGCTCTTATGATGCTGAGTAGCGAATGCACACTGCCTCAACCGAAAATGCCAGGATTCTTTACCGAGAGAGATCCTGTTGGTGACACTTCTTCATCAAGCAATACTAAACTAGTGTCATTTAATGAAGTCACTGTTACTGTGGTGCATCCACGCATTAGTACTACCCAGGTCCTCAATGATGGTGATACCATGGTTTCAGGTGGTGGAACCTTTGTACTAGGATTCTTCAATAGCCAAGACAATCCCATGAAACGTTATCTTGGAATATGTTACAACGAAGTAGTACCTATGACGATCACTGATAAAGGATTGCTTGTGCTTCTCAACAATAACAATAACATCTTTTGGTCATCCAACTCATCAAATTTGACACAACAACCAGTTGCATTGCTTTGGGATTCAGGGAACCTCATTGTGAACACCAATAACAAGGAGTCAGAATATATTCTTTGGCAGAGTTTAGATTACCCTTTTGACACGCTATTGCCAGGGATGAAGCTGGGGACCGATTTAACTACAGGCCTAAATAGGAACCTCACATCAAGGAGTAGCCCTGACGATCCTTCTAATATTTGA 2910 0.4027 MERFPLFLLCFSLMHDAAISSTIQSISTTQSLTDGDTMVSAGGTFAVGFLSIPEGSKNRYLGIWYNKVPSRTVPWIANRNAPLNDSSGVLKITANGTLALHTHNDTIIWHSNSSGIAQRPVAVLLDSGNLVVKEDGSNDDDLKSFIWQSFDYPYDTLLPGMKLGSDLTTGLTRYLTSPISSDDPSEGSYTLQLDIVGYPQFCIRNGESRTYCAGPWNGVRFGGIPQLKHNTIYTYYFVYNKEEIYYSYELENSAVYSRFVLTADGSMIRYVWSVTNKSWSVYLTLPTDICDDYGKCGAYGICNVANSPVCGCLLTGFEPKVPEEWNQTDWSDGCVRINKLNCQDDGFVQLSGLKLPNTQRASGLNNSMSLEECANLCMKNCSCTAYASLDIRNGGSGCLFWYDELIDIRVLSDPQQDLFVRMSRKDIDEIMKSKHKSKNKKVLIIAFSSVISVGILILCLSFIVYRRKKNKINYRSMRHNTERYAHAIEDQEEDLDLPLFDMATLISATNNFSTNKILGKGGYGTVYQGTLKDGREIAVKRLSENSRQGLQEFKSEVMNVVKLQHRNLVKLLGCCIQAEERMLIYEFMPNKSLDYFIFDKERSTQLLWPQRFLIIVGIARGVLYLHQDSRHRIVHRDLKASNVLLDDEMNAKISDFGLARSFKGNENEANTTRVVGTYGYLSPEYLIDGIFSTKSDVYSFGVLVLEIVSGKRNRGFSDKNHRFNLLGHVWTLFMDGNCSEIIDPSIRNSSELSGVIRVLHVGLLCVQQNPEDRPSMAHALMMLSSECTLPQPKMPGFFTERDPVGDTSSSSNTKLVSFNEVTVTVVHPRISTTQVLNDGDTMVSGGGTFVLGFFNSQDNPMKRYLGICYNEVVPMTITDKGLLVLLNNNNNIFWSSNSSNLTQQPVALLWDSGNLIVNTNNKESEYILWQSLDYPFDTLLPGMKLGTDLTTGLNRNLTSRSSPDDPSNI* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1482 969 CDD PAN_AP_plant 339 421 - -
Amo08g1482 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Amo08g1482 969 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Amo08g1482 969 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Amo08g1482 969 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Amo08g1482 969 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Amo08g1482 969 CDD B_lectin 29 153 IPR001480 -
Amo08g1482 969 Pfam Domain of unknown function (DUF3403) 784 829 IPR021820 GO:0004674
Amo08g1482 969 Pfam Protein tyrosine and serine/threonine kinase 514 779 IPR001245 GO:0004672|GO:0006468
Amo08g1482 969 CDD STKc_IRAK 518 783 - -
Amo08g1482 969 SUPERFAMILY Protein kinase-like (PK-like) 496 783 IPR011009 -
Amo08g1482 969 PANTHER - 12 826 - -
Amo08g1482 969 PANTHER - 830 967 - -
Amo08g1482 969 SMART ntp_6 342 422 IPR003609 -
Amo08g1482 969 SMART blect_4 29 153 IPR001480 -
Amo08g1482 969 SMART blect_4 833 935 IPR001480 -
Amo08g1482 969 ProSiteProfiles Protein kinase domain profile. 512 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1482 969 SMART serkin_6 512 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1482 969 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Amo08g1482 969 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 826 - -
Amo08g1482 969 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 830 967 - -
Amo08g1482 969 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Amo08g1482 969 SUPERFAMILY alpha-D-mannose-specific plant lectins 874 966 IPR036426 -
Amo08g1482 969 ProSiteProfiles Bulb-type lectin domain profile. 807 930 IPR001480 -
Amo08g1482 969 Pfam D-mannose binding lectin 872 960 IPR001480 -
Amo08g1482 969 Pfam D-mannose binding lectin 72 177 IPR001480 -
Amo08g1482 969 Gene3D - 18 150 IPR036426 -
Amo08g1482 969 Gene3D - 822 932 IPR036426 -
Amo08g1482 969 Gene3D Hepatocyte Growth Factor 340 421 - -
Amo08g1482 969 Gene3D Phosphorylase Kinase; domain 1 485 587 - -
Amo08g1482 969 Pfam PAN-like domain 342 408 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1482 Amo-Chr8 24248101 24264032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1482 430 829 Receptor kinase-like Gene Family AT4G05200 46.154 3.72e-116 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1482 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1482 - - ahf:112769711 1424.84