Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1474 ATGATGAACAATCTTCCATTTCTCTTCGTCATTACAGGGATGGTTCTTCATTTTTTCTTTCTTCGTGATGTCTCAAGCGCAACGGATTCAATATCTATGGTTCAGCCTCTTCATGAAGGAAACACATTGGTTTCTAGTAATGGAACCTTTGAAATGGGGTTTTTCAGCCCAGGAAGTTCTTCAAACCATTACTTAGGTATTTGGTACAAGATTCTCCCGTTGAAAACCGTTGTTTGGGTTGCAAATAGATCCAACCCTGTCAAAGACAACACTAGCATACTCCACATAAACAACCAAGGGATTCTTCAACTTGTCAACAAGAACGGAACCGTCTTTTGGTCTACAAACTCCACCACAAAGATGAACCTTTCGAATCCGATTGCTCAGCTCTTAGATTCTGGAAATCTTGTTATTAGAGATGAGAATGACCAAGATTCCAAGAACTACTACGTCTGGCAAAGCTTTGATTATCCTTGTGATACACTCTTACCGGGGATGAAGCTCGGTTGGGATCTTAAAACCGGTCTTGAACGGCGGTTAACTGCTTGGAAGAATTGGGACGATCCCTCGCCGGGGAATCTTTCTTGGGGAATCTCGCTTGAGGGTTTTCCCCAAGGAATATTCTTGAAGGGCTCGAAAGAGTACTACCGTGTCGGTCCATGGATTGGTCTTCGTTTCAGTGGAACACCTGAATTGAAGCCCAATAACCTTTTTAGTTATAAATTCGTGTCGAACGAAAATGAAGTGTATTTTGTGTATAAGTATAATCTTGAAAAAAAGTCCCTTTTACTGAGACTCGTCATGAACGAAACCTTAGGTAACAGACACGGCTACATGTGGAACGATGGATCTTCGGGTTGGACGGAATTTTCTTCCCATTCGCCGAGAGAAGCGTGTGATCTCTATAATCACTGTGGTCCAAATGCGTATTGCAGCATCATAAGTGGCTATTCAACGTGCCAGTGTCTGAAGGGGTTCAAGCAAAAGTCATCACAAAACTGGACTGAAGGATGTTCTTCTTCATTGCTTGATGAGCAATCGAGATGCAACATGGATAATAAGACGGGTAGTCAGAGAGATGATAAGAATGGGTTTTCTAAAGTTGGAGGAATGAAATACCCAGATACTCGGCGTTCTTGGGTGAATGAGAGTATGAATCTTGATGAATGCAGGGATAAATGCAGAGAGAATTGTTCGTGTATGGCTTATGCAAACTCAGATATTAGAGAAGGTGGTAGTGGCTGTTTGATGTGGTTCGGTGTTCTCGACGATATCAAAGAGTTTTCTGATGGCGGTGCTGATATATACATTCGAACGATCATCGATGGGAAGGAAGGGCACAAAAAGAAGAAGGTAGGACTGATAGTCATCGGTACCAGTGCCTCTGTTCTTGTGGTGGTTCTGATTTTTGGTTACATTGGCCAGAGAATAATAAACTGCAGAGTTAAGAAGAATAATGATGCATATGAAGACTACTTGGATCTTCCTATCTTTGACCTTGCTACAATTGCAAAAGCAACTGAAGACTTTTCCATTAGTAATAAACTTGGAAAAGGTGGATTTGGGACTGTATATAAGGGAACTCTAGTTGATGGACAAAATATTGCTGTGAAGAGACTTTTACAGGGATCTAATTCTGGACAAGGGTTGACAGAATTTATGAATGAAGTTTTATTAATTGCTAAACTTCAACATCGCAATTTAGTGAAGCTTCTTGGTTGTTGCATTCAAGATGGAGAAAAGATGCTTGTCTATGAATACATGCCCAATAAGAGCCTAGACAATTTTATCTTCGTGGTTATATGGCTCCTGAATATGCTATTTATGGATTATTCTCAATAA 1842 0.4061 MMNNLPFLFVITGMVLHFFFLRDVSSATDSISMVQPLHEGNTLVSSNGTFEMGFFSPGSSSNHYLGIWYKILPLKTVVWVANRSNPVKDNTSILHINNQGILQLVNKNGTVFWSTNSTTKMNLSNPIAQLLDSGNLVIRDENDQDSKNYYVWQSFDYPCDTLLPGMKLGWDLKTGLERRLTAWKNWDDPSPGNLSWGISLEGFPQGIFLKGSKEYYRVGPWIGLRFSGTPELKPNNLFSYKFVSNENEVYFVYKYNLEKKSLLLRLVMNETLGNRHGYMWNDGSSGWTEFSSHSPREACDLYNHCGPNAYCSIISGYSTCQCLKGFKQKSSQNWTEGCSSSLLDEQSRCNMDNKTGSQRDDKNGFSKVGGMKYPDTRRSWVNESMNLDECRDKCRENCSCMAYANSDIREGGSGCLMWFGVLDDIKEFSDGGADIYIRTIIDGKEGHKKKKVGLIVIGTSASVLVVVLIFGYIGQRIINCRVKKNNDAYEDYLDLPIFDLATIAKATEDFSISNKLGKGGFGTVYKGTLVDGQNIAVKRLLQGSNSGQGLTEFMNEVLLIAKLQHRNLVKLLGCCIQDGEKMLVYEYMPNKSLDNFIFVVIWLLNMLFMDYSQ* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1474 613 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Amo08g1474 613 Pfam D-mannose binding lectin 76 184 IPR001480 -
Amo08g1474 613 PANTHER - 16 598 - -
Amo08g1474 613 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Amo08g1474 613 SUPERFAMILY Protein kinase-like (PK-like) 487 601 IPR011009 -
Amo08g1474 613 CDD B_lectin 34 158 IPR001480 -
Amo08g1474 613 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 16 598 - -
Amo08g1474 613 Gene3D - 22 155 IPR036426 -
Amo08g1474 613 Gene3D Hepatocyte Growth Factor 357 431 - -
Amo08g1474 613 SMART blect_4 34 158 IPR001480 -
Amo08g1474 613 Pfam PAN-like domain 361 424 IPR003609 -
Amo08g1474 613 Pfam Protein tyrosine and serine/threonine kinase 512 597 IPR001245 GO:0004672|GO:0006468
Amo08g1474 613 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 189 IPR036426 -
Amo08g1474 613 SMART ntp_6 360 439 IPR003609 -
Amo08g1474 613 ProSiteProfiles PAN/Apple domain profile. 349 440 IPR003609 -
Amo08g1474 613 Pfam S-locus glycoprotein domain 216 329 IPR000858 GO:0048544
Amo08g1474 613 Gene3D Phosphorylase Kinase; domain 1 475 587 - -
Amo08g1474 613 CDD PAN_AP_plant 357 439 - -
Amo08g1474 613 ProSiteProfiles Protein kinase domain profile. 510 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1474 Amo-Chr8 24096209 24101018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1474 439 598 Receptor kinase-like Gene Family AT4G04500 49.102 5.41e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1474 S_locus_glycop 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1474 - - qsu:112016032 629.402