Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1473 ATGGATAATCAGGACAATCAAAGTTTGAAGAAGAATCATCTTCCACTATTCTTGCTTCTTCTCAGTAAAATTCTCTTGTTCTCTCAACACGTCTCAAGTGAAACTGATTCAATTTCCATGTCTCAGCAACTTCCTGAAGGGAAAACCTTGGTTTCACAAGGTGGAAGCTTTGAATTTGGTTTCTTCAGCCCAGGAAGTTCTGAAAACCGTTACTTGGGGATATGGTACCATAATATTCCAGTAAGAACAGCTGTTTGGGTTGCAAATAGAGCCAACCCTGTCAAAGAAAAATCTAGCATGCTGCATATAAACAATGAGGGAAATCTTGATCTAGTTAACCAAAATGGCAGTGTAATATGGTCAGCAAAGTCAACAAAGAAGGCGCAGAGTCCAATTCTTCAGCTCTTAGASTCCGGGAATCTAGTTCTGAGAGATGAAACTGACCAAGATCCTGAACARTTTCTATGGCAAAGCTTTGATTACCCTTGTGACACACTCTTGCCAGGAATGAAGCTAGGATGGGACCTTAAAACTGGTCTAGAGAGGCGTGTAACGGCTTGGAAGAATGGGGATGATCCATCACCAGGTGATTTTTCTTGGGGTATCTCAATTCTAGGTGTTCCTCAAGTTATGATGTGGAAAGGCTCTGATGAATTCTATCGTGGCGGTCCATGGATTGGTATTGGATTCAGCGGTGCACCAGAGCTGAAGACTAATCCGCTTTTCGAGTTCAAGTTTGTATCCAACAATGATGAAGTTTACTACACATTCAATCTCACAAATAAGTCTATGATTTCAAGAGTTGTTATGAACCAAACATTGCTTACTCGCCAGCGATATATTTGGATTCAAGATGCCAAATCTTGGAGGCTATATGCTTCTGTGCCTAGAGATAACTGTGACTCTTATAGCCTCTGTGGTCCTAATTCAAATTGTATCATAGCTGATTCGCCAGTGTGCCAGTGTTTGACAGGTTTTGAGCCTAAATCGCAGCAGAGTTGGGACATGATGGATTGGACTCAAGGATGCATACTCACTGACAAATTGAGCTGTAATGATACCAGCAAAGATGGGTTTATGAAATTCAGTGGATTGAAGTATCCAGATACTTCACATTCTTGGGTCAATCAGAGTATGAATCTTAATCAATGCAGGGATGAATGCTTGAAGAATTGTTCCTGTAAAGCGTATGCGAATTCGGATGTTAGAGGAGAAGGTAGTGGCTGTTTGATGTGGTTCAGTGAGCTCCAAGATATTCGACAGTTTTCTGGTGGCGGTGGTCAAGATGTTTATATTCGAATGAAAAGCTCGGCTATAGGTAGGAGAGGCCATAACATGAATTTGGCAGTGATATTAATCAGCCTTGCCTCTGTAATTGTGGTGTCTCTGGTTTTGTACTTTATAGGCAAGAGAATCATAAGCTTAAGAGCTAAGAACACAGAGAAGAAGTTATTGGTGGAAAAACATGATGATGAAGGTGATAAAGAAGATCTAGAGCTTCCAATCTTTGATCTTGCTACAATTGTCAAAGCAACTGGTGACTTCTCATTCAGCAATAAACTTGGAGAAGGTGGATTTGGAACCGTATATATGGGTACCTTAGCAGATGGACAAGAAATTGCTGTGAAGAGACTCTCACGGAGTTCTGGACAAGGATTGAATGAATTTAAGAATGAAGTGATATTGATTGCTAAACTTCAGCATCGAAATCTTGTTAAGCTTCTTGGATGCTGTATTCAAGGAGATGAGAAGATGCTTGTCTATGAATACATGCCTAACAAAAGCCTAGACTCTATTATCTTTGATCATGCCAAAAGTAAAGTTTTAGATTGGTCTAAGCGCTTCAACATCATTTGTGGAGTTGCGCGGGGACTGCTTTATCTTCATCAAGATTCTAGGCTAAGGATAATACACAGAGATCTTAAAGCGAGTAATGTGTTACTTGACAGCGAGTTGAGTCCCAAAATATCCGATTTCGGCATGGCTAAAACTTGTGGAGGTGATCAAACAGAAGGAAATACAAATAGGGTGGTTGGAACATACGGCTACATGGCACCTGAATATGCTATTCATGGACTATTCTCAGTCAAATCCGATGTCTTTAGCTATGGCGTATTACTTTTGGAGATAGTAAGTGGTAAAAAGAACAGAGGATTTTCTCAATCAAAGAACTATATAAACCTTATCGGACATGCATGGATATTGTGGAAAGAAAACAGGCCACTGGAGTTGATTGATCCTTGCATGGAGAATTCATGTGATCTATCAGAAGCATTGCGTTGCATCCACATAAGTCTTCTATGTGTGCAACAGAACCCTGAAGATAGGCCAACAATGTCAAATGTGGTTGTGATGTTGGGAAGTGAGGGTCCCTTGCCCCAACCTAAGGAACCTGCTTTCCTCACTGAGAAGTACTCTTTTGAAGTAGATTCTTCTAGCAAACAAATATCTTCTTCTACCAATGAAATCAGTGTCACGATGTTAGAGCCTCGTTAG 2496 0.4046 MDNQDNQSLKKNHLPLFLLLLSKILLFSQHVSSETDSISMSQQLPEGKTLVSQGGSFEFGFFSPGSSENRYLGIWYHNIPVRTAVWVANRANPVKEKSSMLHINNEGNLDLVNQNGSVIWSAKSTKKAQSPILQLLXSGNLVLRDETDQDPEQFLWQSFDYPCDTLLPGMKLGWDLKTGLERRVTAWKNGDDPSPGDFSWGISILGVPQVMMWKGSDEFYRGGPWIGIGFSGAPELKTNPLFEFKFVSNNDEVYYTFNLTNKSMISRVVMNQTLLTRQRYIWIQDAKSWRLYASVPRDNCDSYSLCGPNSNCIIADSPVCQCLTGFEPKSQQSWDMMDWTQGCILTDKLSCNDTSKDGFMKFSGLKYPDTSHSWVNQSMNLNQCRDECLKNCSCKAYANSDVRGEGSGCLMWFSELQDIRQFSGGGGQDVYIRMKSSAIGRRGHNMNLAVILISLASVIVVSLVLYFIGKRIISLRAKNTEKKLLVEKHDDEGDKEDLELPIFDLATIVKATGDFSFSNKLGEGGFGTVYMGTLADGQEIAVKRLSRSSGQGLNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDSIIFDHAKSKVLDWSKRFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDSELSPKISDFGMAKTCGGDQTEGNTNRVVGTYGYMAPEYAIHGLFSVKSDVFSYGVLLLEIVSGKKNRGFSQSKNYINLIGHAWILWKENRPLELIDPCMENSCDLSEALRCIHISLLCVQQNPEDRPTMSNVVVMLGSEGPLPQPKEPAFLTEKYSFEVDSSSKQISSSTNEISVTMLEPR* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1473 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Amo08g1473 831 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1473 831 CDD PAN_AP_plant 348 433 - -
Amo08g1473 831 Pfam D-mannose binding lectin 83 188 IPR001480 -
Amo08g1473 831 CDD B_lectin 44 162 IPR001480 -
Amo08g1473 831 Gene3D - 29 159 IPR036426 -
Amo08g1473 831 Gene3D Phosphorylase Kinase; domain 1 488 590 - -
Amo08g1473 831 Pfam Protein tyrosine and serine/threonine kinase 516 785 IPR001245 GO:0004672|GO:0006468
Amo08g1473 831 SMART ntp_6 354 434 IPR003609 -
Amo08g1473 831 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Amo08g1473 831 ProSiteProfiles Bulb-type lectin domain profile. 35 156 IPR001480 -
Amo08g1473 831 Gene3D Transferase(Phosphotransferase) domain 1 591 790 - -
Amo08g1473 831 PANTHER - 34 828 - -
Amo08g1473 831 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1473 831 Pfam S-locus glycoprotein domain 220 330 IPR000858 GO:0048544
Amo08g1473 831 Pfam Domain of unknown function (DUF3403) 789 831 IPR021820 GO:0004674
Amo08g1473 831 ProSiteProfiles PAN/Apple domain profile. 351 435 IPR003609 -
Amo08g1473 831 PIRSF SRK 7 831 IPR024171 GO:0004674
Amo08g1473 831 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 34 828 - -
Amo08g1473 831 SMART blect_4 41 162 IPR001480 -
Amo08g1473 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 193 IPR036426 -
Amo08g1473 831 CDD STKc_IRAK 521 786 - -
Amo08g1473 831 SUPERFAMILY Protein kinase-like (PK-like) 500 786 IPR011009 -
Amo08g1473 831 Pfam PAN-like domain 351 419 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1473 Amo-Chr8 24081803 24085404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1473 436 831 Receptor kinase-like Gene Family AT4G23140 51.463 8.27e-130 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1473 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1473 - - tcc:18593755 1054.66