Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1470 ATGGACCTGCTTCTCCTCACTCTTCATCTTCTTCTCTTACCCTTCACAACATCACAACAACAGAACCAAAACTACCCTTCTTCTGGGACACAAAGAAACGATACCTACTGTGACTACCCTTCAGTTTGTGGACCAAATGGGAACTGTGACATTAATCAATCACCAGCATGTTTCTGTTTGGATGGTTTCACACCTAAGTCACCGAGTGGTTACAGTTCAATGGATTATACACAGGGCTGTGTTAGAAACAAGGCTTTGAATTGTAGCACTGACGTGTTTGTTGCTTATTCTGTGTTCAAGGAACCAAGTGGCGGCTACTCTTTGTTGAACCAAAGATTGGGAGCGGAAGGTTGCAAGGGAAGCTGCAAGAGTAATTGTTCTTGCATGGCTTATTCTGTAACTGGGAGTGCATGCAAATTGTGGAGTGGTGATTTGTTTGATGTTAGGTTGGTTAAGGAAGGTGGTCAAGCTCTTTATATTCGAATGTCAGCTTCAGAGGAACACAAATCTGGAGGGGGAAATCACAAGAAGATAGTTGGAATAATAGTAGGAAGCACAGTTGCTACAGTTTCTGGAATGATAATGATATTGGCCTGTTGTTACATATTCAGAAAAAGAAGAAAGAAGTTAGAAGATATGAGATTGAGAGCTAGTGAGATTGTTGATCAAATCAATGAATATGAAGAAGGAGATATAGAGCTTCCATTTCTTGACCTATCAAGAATAGTTGAAGCCACTGGTAATTTTGCAATGGGAAACAAGTTAGGGGAAGGTGGTTTTGGACCTGTGTACAAGGGGACATTAGATGATGGTCGTCAAATCGCGGTAAAGAAGCTTTCGAGTAGTTCTGGGCAGGGGATAAATGAATTCAAGAATGAAGTACTACTCATAGCCAAACTTCAACACCGAAATCTTGTAAGGCTTCTCGGATGTTGCATCGAAGATGAAGAGAAACTGCTGATATATGAGTACATGCCTAATAAAAGCTTAGACGGCTTTATTTTTGATCAAACACGGAGAAAATTATTGGATTGGCCTAAGCGTTTCAACATCATTTGTGGGATTTCTAGAGGCCTACTTTATCTTCACGAGGATTCTAGGTTGAGGATTATACATAGAGATCTCAAAGCAAGTAACATTTTATTGGACAATGAGATGGATCCAAAGATCTCTGACTTTGGTTTGGCTCGATGTTTTGGAGGAGATCAAAGCAAAGGAAATACAAAGAAAATAGTAGGAACTTTTGGATATATGGCACCAGAATATGCTATTAGTGGACACTTCTCGGTAAAATCTGATGTGTTCAGTTTCGGAATTTTGTTGCTGGAGATAATCACAGGGAGAAAAAATAGAGGGATATATTTTCCAAGTGACAATGTGAATCTATATGGACATGCATGGGATCTATGGAAGCAAGGAAGGTCCTTAGAACTAGTTGATGAATGCCTTAAGGAGTCATGGAATTCGTCGGAAGCGCAGCGCTGCATCCACATTTGCCTGCTATGCGCGCAGCAGCATCCGCAAGATAGGCCGGACATGTCATCTGTGGTTCTGATGTTAGGAAGTGAAATCGATTTGCCTCAACCAAAGTTTCCTACTTTCATCATTGGTGGAAATTCTGATGGCAAAAGTTCTTCCTCTTGTCAAAATGAAATAAGCATTACAGAGGTGGAACCTCGATAA 1683 0.4064 MDLLLLTLHLLLLPFTTSQQQNQNYPSSGTQRNDTYCDYPSVCGPNGNCDINQSPACFCLDGFTPKSPSGYSSMDYTQGCVRNKALNCSTDVFVAYSVFKEPSGGYSLLNQRLGAEGCKGSCKSNCSCMAYSVTGSACKLWSGDLFDVRLVKEGGQALYIRMSASEEHKSGGGNHKKIVGIIVGSTVATVSGMIMILACCYIFRKRRKKLEDMRLRASEIVDQINEYEEGDIELPFLDLSRIVEATGNFAMGNKLGEGGFGPVYKGTLDDGRQIAVKKLSSSSGQGINEFKNEVLLIAKLQHRNLVRLLGCCIEDEEKLLIYEYMPNKSLDGFIFDQTRRKLLDWPKRFNIICGISRGLLYLHEDSRLRIIHRDLKASNILLDNEMDPKISDFGLARCFGGDQSKGNTKKIVGTFGYMAPEYAISGHFSVKSDVFSFGILLLEIITGRKNRGIYFPSDNVNLYGHAWDLWKQGRSLELVDECLKESWNSSEAQRCIHICLLCAQQHPQDRPDMSSVVLMLGSEIDLPQPKFPTFIIGGNSDGKSSSSCQNEISITEVEPR* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1470 560 Coils Coil 210 230 - -
Amo08g1470 560 Pfam PAN-like domain 88 148 IPR003609 -
Amo08g1470 560 Pfam Protein tyrosine and serine/threonine kinase 251 518 IPR001245 GO:0004672|GO:0006468
Amo08g1470 560 SMART serkin_6 249 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1470 560 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 24 556 - -
Amo08g1470 560 CDD STKc_IRAK 255 520 - -
Amo08g1470 560 ProSiteProfiles PAN/Apple domain profile. 88 163 IPR003609 -
Amo08g1470 560 MobiDBLite consensus disorder prediction 538 560 - -
Amo08g1470 560 Gene3D Transferase(Phosphotransferase) domain 1 325 526 - -
Amo08g1470 560 SUPERFAMILY Protein kinase-like (PK-like) 234 520 IPR011009 -
Amo08g1470 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 556 - -
Amo08g1470 560 MobiDBLite consensus disorder prediction 538 554 - -
Amo08g1470 560 Gene3D Phosphorylase Kinase; domain 1 210 324 - -
Amo08g1470 560 ProSiteProfiles Protein kinase domain profile. 249 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1470 560 Pfam S-locus glycoprotein domain 28 67 IPR000858 GO:0048544
Amo08g1470 560 CDD PAN_AP_plant 86 161 - -
Amo08g1470 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Amo08g1470 560 SMART ntp_6 88 162 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1470 Amo-Chr8 23983258 23986125 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1470 205 560 Receptor kinase-like Gene Family AT4G11530 51.762 2.52e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1470 PK_Tyr_Ser-Thr 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1470 - - adu:107462470 783.097