Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1466 ATGGAAAATTTTCTTATTATTTTTCTTGTTCTTGTTTCCTACACCTACATGTTTGTGGAAGCTTCTTCCTCTAATTCTTCATCTTCTGGTTTAAATAAAAATGATAGCACCACCATATGTGACCAATACAGTAGAGTGTGTGGACCAAACGGGAACTGCGATGAGGCAAAAACTTGTGTTTGCTTGGATGGTTTCACACCTAAGTCCCCAACTGATTATGCTTATTACTTGAACTTTACACAGGGATGTGTGAGAAACAAACCTTTGAATTGTAGCACTGACGTGTTTGTTAGATATTCTTCTCTTAAAGAACCCAGTGGTGGTTATTCTTTGTCCAACCAACAGGATTGCATGGGAAAATGCAAGAGCAACTGTTCTTGTATGGCGTATAACGTAATTTTGGGTGGATGCAAATTGTGGAATGGTGATTTGTTTGATGTTAGGTTGGTCAAGCAAGGTGGACAAGATCTTTATATTCGAATGGCAGTTTCAGAGGAACAAGAGAAGTCAGGAGGGAGAAAACATGGACGAAAGGAGGGAGCGGTGGTTGGAATAGTTGTCGGGAGCACTATTGTGATTTCCATGATAATTATCGCTTCATGGTACATGCTTAGGAAAAAAACAGCATCAAAAGCATTGGAACGTTTAAGGATTGATGAGCTTGTTACTCATCACACCAATGTACAAAAGGAAGATATGGGGCTTCCATTATTTGATCTATCAACAATAGCAATGGCCACTAATAATTTCTCCCCAAACAATAAACTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGTATATTAGAAGATGGACAACAAATTGCTGTCAAGAGGCTTTCAAGTAGTTCTGGACAGGGTTTAAATGAATTTAAAACCGAAGTAAAGCTGATAGCTAGACTTCAACACCGGAATCTTGTAAAGCTTTTCGGATATCAAGAACGAAGGAGTACTTTAGATTGGTCCAAGCGCTTTAACATTATTAGTGGAATTGCTAAAGGCTTATTGTATCTTCATCAAGATTCAAGGTTAAGGATTATACATAGAGATCTTAAAACAAGTAATATTTTATTAGACATTAAGATGGAACCCAAAATATCAGATTTTGGTCTAGCTAGAACTTTTGGAGGTGATCAAAGTAAAGCAAATACAAGGAGAATTGTCGGAACTTTCGGATACATGGCTCCAGAATATGCTGTTAATGGACTGTTTTCGATAAAATCTGACGTCTTTAGCTTTGGCATTTTATTACTTGAGATAGTATCTGGAAAGAGAAATAGAAGATTATTTTATGCAAGTGACAATGATGAAAGCTTGTATGAAAACGCGTGGGATTTATGGAAGCAAGGAAGGTCACTGGAGTTGGTGGATGAATGCCTGAAAGATTCATGGAATTTGAGTGAAGTACAACGTTGTATTCATATTGGCCTCCTATGTGCACAGCAATATCCACATGATAGGCCAACAATGTCTTCTGTGGTTTTAATGTTGGGAAGCGAAGTTGATTTGCCTCAACCCAAAGCTCCTACATTTTTCTTGTGTGAACCTTTTGATGGTTCCAGTTCCAGTACTTGTAAAAACGAATTAAGCATTACAGAGATGGAAGCTCGGTAA 1614 0.3792 MENFLIIFLVLVSYTYMFVEASSSNSSSSGLNKNDSTTICDQYSRVCGPNGNCDEAKTCVCLDGFTPKSPTDYAYYLNFTQGCVRNKPLNCSTDVFVRYSSLKEPSGGYSLSNQQDCMGKCKSNCSCMAYNVILGGCKLWNGDLFDVRLVKQGGQDLYIRMAVSEEQEKSGGRKHGRKEGAVVGIVVGSTIVISMIIIASWYMLRKKTASKALERLRIDELVTHHTNVQKEDMGLPLFDLSTIAMATNNFSPNNKLGEGGFGPVYKGILEDGQQIAVKRLSSSSGQGLNEFKTEVKLIARLQHRNLVKLFGYQERRSTLDWSKRFNIISGIAKGLLYLHQDSRLRIIHRDLKTSNILLDIKMEPKISDFGLARTFGGDQSKANTRRIVGTFGYMAPEYAVNGLFSIKSDVFSFGILLLEIVSGKRNRRLFYASDNDESLYENAWDLWKQGRSLELVDECLKDSWNLSEVQRCIHIGLLCAQQYPHDRPTMSSVVLMLGSEVDLPQPKAPTFFLCEPFDGSSSSTCKNELSITEMEAR* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1466 537 ProSiteProfiles PAN/Apple domain profile. 91 162 IPR003609 -
Amo08g1466 537 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 25 312 - -
Amo08g1466 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Amo08g1466 537 Pfam Protein kinase domain 253 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1466 537 Pfam Protein kinase domain 318 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1466 537 ProSiteProfiles Protein kinase domain profile. 250 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1466 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 312 - -
Amo08g1466 537 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 314 530 - -
Amo08g1466 537 Gene3D Phosphorylase Kinase; domain 1 223 313 - -
Amo08g1466 537 SMART ntp_6 91 161 IPR003609 -
Amo08g1466 537 CDD PAN_AP_plant 88 162 - -
Amo08g1466 537 SUPERFAMILY Protein kinase-like (PK-like) 233 497 IPR011009 -
Amo08g1466 537 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 314 530 - -
Amo08g1466 537 Pfam PAN-like domain 91 147 IPR003609 -
Amo08g1466 537 Gene3D Transferase(Phosphotransferase) domain 1 314 508 - -
Amo08g1466 537 Pfam S-locus glycoprotein domain 32 69 IPR000858 GO:0048544
Amo08g1466 537 SMART serkin_6 250 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1466 Amo-Chr8 23930493 23933056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1466 182 511 Receptor kinase-like Gene Family AT4G23230 49.580 4.97e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1466 Pkinase 3.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1466 - - aip:107610641 729.939