Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1454 ATGACAACTAGAGAGAAGAGAAGAAAAGCTGCAGGCAGAAGCATAGAGCGGATGGAAATGGTTCTGAAGTGGATGCTAATAATTAGTAGTGCTCATTTTGTCTTAACTCAACGGAACCAAAGCGAAAAGAGCTACTGCGACTACCCTGGAATTTGTGGACCCAATGAGAACTGCGACGTTAATAAGGCGCAAGCTTGTGAATGCTTGGATGGTTTCACACCTAGGTCTCTCACTGCCTTCGGTAGCCTCGACCTTACGCAGGGGTGTGTCAGAAAGAAACCACTCGACTGTAGCACCGATGTGTTTGTTACCTATCCTGTGCTCCAAGAACCCACTGGAAATGGCACGTATTATTCTGTGCTGGACCAGAGTTTGGGTTGCAAGGAGAACTGCAAGAGTAATTGTTCTTGCATGGCTGCTTATACAACTGGCAGCGGTGGATGCAAATTCTGGAGTGCTGATTTGTCTGATATTAGGGTCATACAGGGAGGACACCAATATCTTTATATTAGAATGCCGGCTTTCGACCAAGTAGCAGAACCCGGACACCAAAGTCACAGGCGCAACGAGCATCATATGGTGGTGGGAGTAGTTGTTGGCAGCGCTGTTCTGATTTTGGGGGTGATCTTGGCTTCTTGGTACATGCTCGCTAAAAGAACAAAGTCAAAAGCATTGGGAGATATAAGTATTAGTGAGATGTTTAGTGATACCAATGAACAAGAAAGAGAGCTGGACCTTCCATTACTTGACCTATCAAGAATAGTTATAGCAACTGCTAACTTTTCTCTCAACAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGTGTATTAGATGATGGACAAGAAATTGCTGTTAAGAGGCTTTCAAATAATTCTAAGCAAGGCTTAAATGAATTCAAAACCGAGGTGAAATTAATAGCCAAACTTCGACATCGTAATCTTGTGAAACTTCTTGGTTGTTGCATTCAAAAAGGAGAAATTAATATTCACCTAATATTTTTCAATATTGTTGGACAGCATACTTACAAGCCTTAA 1044 0.4253 MTTREKRRKAAGRSIERMEMVLKWMLIISSAHFVLTQRNQSEKSYCDYPGICGPNENCDVNKAQACECLDGFTPRSLTAFGSLDLTQGCVRKKPLDCSTDVFVTYPVLQEPTGNGTYYSVLDQSLGCKENCKSNCSCMAAYTTGSGGCKFWSADLSDIRVIQGGHQYLYIRMPAFDQVAEPGHQSHRRNEHHMVVGVVVGSAVLILGVILASWYMLAKRTKSKALGDISISEMFSDTNEQERELDLPLLDLSRIVIATANFSLNNKLGEGGFGPVYKGVLDDGQEIAVKRLSNNSKQGLNEFKTEVKLIAKLRHRNLVKLLGCCIQKGEINIHLIFFNIVGQHTYKP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1454 347 Pfam S-locus glycoprotein domain 40 75 IPR000858 GO:0048544
Amo08g1454 347 Pfam Protein tyrosine and serine/threonine kinase 262 332 IPR001245 GO:0004672|GO:0006468
Amo08g1454 347 ProSiteProfiles Protein kinase domain profile. 261 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1454 347 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 329 - -
Amo08g1454 347 SUPERFAMILY Protein kinase-like (PK-like) 242 331 IPR011009 -
Amo08g1454 347 ProSiteProfiles PAN/Apple domain profile. 97 174 IPR003609 -
Amo08g1454 347 Pfam PAN-like domain 97 158 IPR003609 -
Amo08g1454 347 PANTHER - 38 329 - -
Amo08g1454 347 CDD PAN_AP_plant 94 173 - -
Amo08g1454 347 Gene3D Phosphorylase Kinase; domain 1 223 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1454 Amo-Chr8 23793039 23804740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1454 170 329 Receptor kinase-like Gene Family AT4G04500 44.578 7.48e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo08g1454 PK_Tyr_Ser-Thr 2.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1454 - - ahf:112705338 612.068