Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1447 ATGGCAGAAGATCAATTTCAGGCAAGTGGAAACTGGTGGGAGAATCCAGCTATTAGGAACAATTGGCAACCGCATCACCAACAACAAGATGAATCAGATCACATGATGAAACCAACAAGGGTTTCTATGGATTCCTCGGGTGGTGGCGGTGCCGGTGGCGGTTCGTCTTCTGTGGTGTTTCATGACCCACAGAAGCTTCAGCCTCCGGATTCCGCCACGGCCGCCACTTCTTCCACTGACCCCAACTTGCACTTTATGGCTTTAGGCCTCTCTTCCCCGCCCATCGATTGGAATCAACAACCATCCTTCTTGCGTGGTGAGAAGGGTGGAGAGAACAGCTTCAGGTCGATGCTACAAGAAGAGGGTGGCGGCGGCGGCGGCATGGGGTTGTCACCACAACAAGTCCATCAATGGAGATCACCGGAAACCGAATTCAAGAACAATAGAGGTTTCTGTTTGGAGCAAAACCAATTCAGTCCTCAATATAGCTCCGGTGACAGCACAGTAACAAGCCAACAAGGATTTCATCACCAAAACATGGATCATTCCGCAGTTCTATACGGTAGCCCTTCATCAATCTTACAAGGACTATTAGGACCTGATCATCATCACCATCATCATCAACAACAAGCTAATCATAATTTTTCATATCCAACTTCAAACTATGGGTTGAGTTCTTCTAGTAGCAATGACTTTGTGCCTTCTTCTTCTTCTTCTAATTGGTCTAATAACAACAACAATAATAATAATAACAATAAAGTGCCTCAGTTCTTGAGAGGCTCACCACCAAAACAGTTATCGAATTCGTCATCATCACCGATAACAACAACAAACACTAGTTTGCATTTCACAAACAACGCTCCTTTTTGGAACGCTGCTGCTTCTGACCCTAAAGATGTTAGGTCCACCACCTTCTTCCCTAATTCATTGCAGCCACCATTCTTCACTAATCCAAGTTTTGATGTCCAATCTAAGAATATGAGTGAAATGAGGGATTCAGGTGCAGTGGTGAAGAAAAGTGGGAGTGAACCAACACCCAAAAGGCCTCGGAACGAAACTACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGATACAGCCTCAGTGTTATCTGAAGCAATTGAATACATCAAATTCCTCCATGAACAGGTCACTGTTTTGAGTACCCCGTATATGAAAAGTGGAGCTCCTATACAGATTCAACAGGGTTCCGGTAAATCTAAGGAAGGTGAGGGTCCAAAACAAGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCAAGCACATTTCCAATGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTTGGAGGAGGTTCAAGATAG 1419 0.4482 MAEDQFQASGNWWENPAIRNNWQPHHQQQDESDHMMKPTRVSMDSSGGGGAGGGSSSVVFHDPQKLQPPDSATAATSSTDPNLHFMALGLSSPPIDWNQQPSFLRGEKGGENSFRSMLQEEGGGGGGMGLSPQQVHQWRSPETEFKNNRGFCLEQNQFSPQYSSGDSTVTSQQGFHHQNMDHSAVLYGSPSSILQGLLGPDHHHHHHQQQANHNFSYPTSNYGLSSSSSNDFVPSSSSSNWSNNNNNNNNNNKVPQFLRGSPPKQLSNSSSSPITTTNTSLHFTNNAPFWNAAASDPKDVRSTTFFPNSLQPPFFTNPSFDVQSKNMSEMRDSGAVVKKSGSEPTPKRPRNETTPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQIQQGSGKSKEGEGPKQDLRSRGLCLVPVSSTFPMTHETTVDFWTPTFGGGSR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1447 472 MobiDBLite consensus disorder prediction 1 25 - -
Amo08g1447 472 MobiDBLite consensus disorder prediction 1 79 - -
Amo08g1447 472 SMART finulus 363 407 IPR011598 GO:0046983
Amo08g1447 472 MobiDBLite consensus disorder prediction 211 279 - -
Amo08g1447 472 CDD bHLH_AtbHLH_like 358 409 IPR045239 -
Amo08g1447 472 MobiDBLite consensus disorder prediction 196 279 - -
Amo08g1447 472 Gene3D - 362 417 IPR036638 GO:0046983
Amo08g1447 472 MobiDBLite consensus disorder prediction 418 440 - -
Amo08g1447 472 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 460 - -
Amo08g1447 472 MobiDBLite consensus disorder prediction 326 358 - -
Amo08g1447 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Amo08g1447 472 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 51 460 - -
Amo08g1447 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 417 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1447 Amo-Chr8 23713227 23717718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1447 105 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.521 1.19e-69 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1447 - - ahf:112772433 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1299 18 23279994 23284779 Amo08g1447 08 23713227 23717718 hybridization