Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1415 ATGGATTCACAACAGCTATATAGTTTTGGTGTGACAAGTGCAGGACTACCTTATATTCCATCCTTCCCCACAATTCCGTCGTCGCAACCCAACAGGCTTCTTGGATCCTTGAAATTTGACACTGGGAACTCGCCCAATTCGCCCTTTTCGACTCATTTTGATTCTGATACTCTTTCAGCCTTTAGTGATAGCCAGGACCAGCAGCACAGCCCTGGAGAAATCCTATCCGGCGTCAGCACCTCGTGCAACTCGCCTTTCGAAACCAACCATTACTTGCATACATCAGTCTCGTCTGCAGACAGTAATAGGGGCAGTTTTCAACTCTATTCTGCCAGGAGCTCTCTTCTGCAGAATGCAAATTGTAACCAGAAAATTCGAAACGTGTTGCTGGAATTAGAATCTGCTCTGATGGCCCCGGACGAAGAAGAAGTCACTACATCGAATGCTTCCATGGTTGAGAGCAGTGGACCAACAACATCTGGCCAAAGAAACAGGTCATGGAGTCATGATCATTACGGCTCGCAATTTGTTCAGAGCCAGGGATCATATGTAACTGGAAGCAGGCAAACAAGTGAGTTTGAACATGTTATGAAGCGCCAGAAATCGATAGTGGAAGCATCATCGCCCCCAGGTTACCCCTCGGGAAATTTGAAACAATTGCTGGTTGCTTGTGCAGAGGCCATGGCTGATGGCAACATGAATGATTTTGATCAATTGATATCAAAGGCTAAAGGTGCTGTATCTATAACCGGTGAGCCATTGCAACGGCTCGGTGCTTACATGGTAGAAGGGCTGGTTGCTAGGAAGGAAGCATCAGGGACCGGCATCTATCGCGCCCTTAAGTGCAGAGAGCCGGAAGGCAAAGACTTACTTTCATACATGCAAATGCTGTTTGAAATCTGTCCCTATCTGAAATTTGGTTACATGGCAGCCAATGGAGCCATAGCCGAAGCGTGCCGAGATGAGGATCACATACACATAATAGACTTTCAGATTGCTCAAGGAACTCAATGGATGACTCTCCTCCAAGCTCTCGCCGCGAGACCTCGAGGACCTCCCCATGTGAGGATCACAGGGATTGATGACCCTGTTTCCAGGTATGCTCGTGGCGAAGGACTAGAGGTAGTTGGGAAAAGGCTGGCCATGATGTCTGAGAAATTTCGCATCCCGGTGGAGTTTCATGGAGTGCCGGTTTATGCTCCGGATGTGACCAGAGACATGCTAAATATCAGGTCCGGAGAGGCTTTGGCTGTGAACTTTCCTTTGCAACTTCACCATACTGCTGATGAGAGTGTTGATGTGAATAACCCAAGAGATGGAATCCTTAGACTGGTGAAGTCGCTTTCGCCCAAGGTGGTAACATTGGTGGAGCAGGAATCAAACACAAACACAACACCATTTTTCAACAGATTCATGGAGACCTTGGACTACTACTTGGCGATCTTCGAGTCTATTGATGTCACACTCCCAAGAAACAGCAAGGAGAGGATCAATGTGGAGCAGCATTGTCTGGCCAGGGATATTGTCAACATTGTGGCTTGTGAAGGGAAGGAAAGGGTCGAGCGCCACGAACTCTTCGGCAAGTGGAAGTCGAGGTTGACTATGGCCGGATTCCGGCAGTGTCCTTTGAGCTCCTATGTGAATTCTGTTATAAGAAGCCTTCTCAGGTGCTATTCTGAACACTATTCCTTGGTGGAGAAGGACGGAGCCATGTTGTTGGCATGGAAGAACAGAAATTTGATATCAGCTTCAGCATGGCACTGA 1764 0.4779 MDSQQLYSFGVTSAGLPYIPSFPTIPSSQPNRLLGSLKFDTGNSPNSPFSTHFDSDTLSAFSDSQDQQHSPGEILSGVSTSCNSPFETNHYLHTSVSSADSNRGSFQLYSARSSLLQNANCNQKIRNVLLELESALMAPDEEEVTTSNASMVESSGPTTSGQRNRSWSHDHYGSQFVQSQGSYVTGSRQTSEFEHVMKRQKSIVEASSPPGYPSGNLKQLLVACAEAMADGNMNDFDQLISKAKGAVSITGEPLQRLGAYMVEGLVARKEASGTGIYRALKCREPEGKDLLSYMQMLFEICPYLKFGYMAANGAIAEACRDEDHIHIIDFQIAQGTQWMTLLQALAARPRGPPHVRITGIDDPVSRYARGEGLEVVGKRLAMMSEKFRIPVEFHGVPVYAPDVTRDMLNIRSGEALAVNFPLQLHHTADESVDVNNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFMETLDYYLAIFESIDVTLPRNSKERINVEQHCLARDIVNIVACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLAWKNRNLISASAWH* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1415 587 Pfam GRAS domain family 217 586 IPR005202 -
Amo08g1415 587 ProSiteProfiles GRAS family profile. 208 587 IPR005202 -
Amo08g1415 587 MobiDBLite consensus disorder prediction 45 79 - -
Amo08g1415 587 MobiDBLite consensus disorder prediction 141 169 - -
Amo08g1415 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 587 IPR005202 -
Amo08g1415 587 MobiDBLite consensus disorder prediction 140 169 - -
Amo08g1415 587 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1415 Amo-Chr8 23036531 23039996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1415 215 586 GRAS Transcription Factor Family AT1G50600 61.022 4.10e-170 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo08g1415 GRAS 1.3e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1415 - - adu:107462432 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1415 08 23036531 23039996 Amo13g2205 13 36970186 36973516 PCT
Amo08g1415 08 23036531 23039996 Amo03g0318 03 6039239 6042495 PCT
Amo13g2205 13 36970186 36973516 Amo08g1415 08 23036531 23039996 PCT
Amo03g0318 03 6039239 6042495 Amo08g1415 08 23036531 23039996 PCT