LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g1410	ATGCCAACAGTGTGGTTCTCACTGAAGAGGTCACTACACTGCAAATCAGATGCATCAGAAGTTCATGATCCTAAATCAAGGAAGCAGCAATTGAGCACAATCTTAACCACAAAGAGGGCATCAGGTAGGTCAGGATGCTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATTGAGAAGCCACCAACTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTCCTCAACCCAATAACACATGAAGTCATCTTGAGCAATTCAAGGTGTGAACTCAAAATCACTGGCTATGGTGGAGGCTTCCATGAAGGGCTTGGAACTGTTGGTAACAATGGTAATAACAACAATGGTGGTGCTCTTGGTAGTGAAAATTCAACCTTTGTTGGAACTTTAAGGCCTGGTACCCCTGGACCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCCTTTAGGCCTTCAACCACCCCACCAAGGAAATCTCCTTTCCTTTTAGGAGATAGTAATAAAGAAGGGTCTGGCTTCCATGGTGGTGGTGGTGGTGGTGCTGGATTTCATCATTCAAGCAATAGATTGTCTCTTGAGACAGATTCCAATGGGGCTTGCACTGTTACTTGTCACAAATGTGGAGAGCAATTCACCAAATGGGATGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTAACTGAACTTGTGGAAGGTGATTCTTCAAGAAAAATAGTGGAGATAATATGCAGGACAAGCTGGTTGAAATCAGAGAACCAATGTGGTAGAATTGAGAGAGTGTTGAAAGTGCACAACATGCAGAAGACATTGGCAAGGTTTGAAGAATACAGAGAGATGGTGAAGATCAAAGCAAGCAAGCTCCAAAAGAAGCATCCAAGGTGCCTTGCTGATGGGAATGAACTCTTAAGGTTCTATGGAACTACAGTTGCATGTTCCTTAGGCCTCAATGGCTCTTCAAGCCTTTGTTTATCTGAGAGATGCTGTGTTTGTAGGATCATAAGAAATGGTTTTTCAGCCAAGAAGGAACTCAAGGGTGGAATTGGTGTTTTCACCACTTCAACAAGTGGAAGAGCCTTTGAATCCATTGAGGTAATTGATCAAGACCCTTCACTGAGAAAAGTGTTGATAGTGTGTAGAGTTATTGCTGGTAGGGTCCATAGGCCTCTAGAGAACATTCAAGAGATTGCAGGCCAAACAGGATTTGATTCTCTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCCTGA	1332	0.4369	MPTVWFSLKRSLHCKSDASEVHDPKSRKQQLSTILTTKRASGRSGCSRSIANLKDVIHGSKRHIEKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGGFHEGLGTVGNNGNNNNGGALGSENSTFVGTLRPGTPGPGGHPTMHYFNPSFRPSTTPPRKSPFLLGDSNKEGSGFHGGGGGGAGFHHSSNRLSLETDSNGACTVTCHKCGEQFTKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSERCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEVIDQDPSLRKVLIVCRVIAGRVHRPLENIQEIAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g1410	443	ProSitePatterns	Zinc finger C2H2 type domain signature.	211	232	IPR013087	-
	Amo08g1410	443	SUPERFAMILY	ADP-ribosylation	234	442	-	-
	Amo08g1410	443	MobiDBLite	consensus disorder prediction	173	194	-	-
	Amo08g1410	443	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	2	443	-	-
	Amo08g1410	443	Gene3D	-	223	442	-	-
	Amo08g1410	443	PANTHER	-	2	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g1410	Amo-Chr8	22956895	22959489	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g1410	1	443	C2H2 Transcription Factor Family	AT5G54630	66.314	0.0	574

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Amo08g1410		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g1410	-		-	gmx:100787790	713.761