Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1408 TTTGATGAGATAATTAAGAAGCATAACAAGCACAGTCTTGAAGAAAAGAGGAAGGAAGCACAAGAAGAACTCCTTATCCAACTATTTGATCCTAAATCTGAAATTTTTGATAAAGATACGGCAGAGTTATTATGGACTACTTGCTGGGAGGATTTGATTAAAATTGAAGATGTTGATTCATGCCCCATACAATCACCAAGTAACACGAATGAAATCAGTTTAGAAAGAGGAATAATAGTTCAAAGAAACATTGAAAATGTGATTAACAATTGCCAACCGCAATTGAGGGAAGGTTTCATTGATTGCTTGAGAAGACACAATCCCCTAATCCATGTCTCAAAGAACAGTTTGCATGCAAGTTATGTGAGATTACTGTCTTCCAGAAGAAACTTGGGTCATGTTTTGCTCCAAGATGTGTCAAGAGCAGAAGATGTTGGAGATGAATCGGTGCAAACTAAAACTAAAACGGAAAACACTGCTCCAAAAGAGAGTGGAAGCGAACAAAATGTGTTTGTTATCGTAGGTATAACTGCAGTGTCATCATTTGGAATTGCAGCGTTTGTTTTCATATTTTGTTGTAGATGTAGCAGAGCAACTGTTGATCAAACTGATGAGAAACCTCTTCTCAGCTTGTGTAGGACTGACTACTCCAATGGGTCCTTTAACAGTAGAAATCCTCCGCAGGAGTCAATGAAAAAAGAAGACAGCATTGAGACTCTTATGTCAAGTAAAATTTTATTTGATGACAATAAAAATAAAAACTTAGCGCATGAAATATATTCAATGCGATTAGCAGGACCGTATGAAATAAGTTCAGTAGGATTAGGAGGAGCTGATGCTTCTGCTGCCGCTTCGGCAAGACCGTCAATGGACTTGAAACCTCCTCCCGGCAGGGTTGGACCACCGTTACCTTTGAAACCTCCTCCTGGAAGGCCAAATCCTCCCTCCGACCCATCAATTCCTCCTCCTTCCGCTGATGAAAATAATCCTCCTCTTCTGCCTCCTCCTGCTGCTGATGCTCCTCCTCCTCCACCACCGCCAAAGCCGAGTAATGCTCCACCTCCTCCTGCACCGCCACCGAGTAGAGGTGGTGGTGGGCCTCCACCTCCTCCACCACCAGGTGGAAAAGGCCCTCCACCTCCCCCTCCACCAGGTGCAAAAGGCCCAGGCCCAGGCCCTCCTCCCCCACCAGCACCTAAGGGAGGAGGTGGTCCACGACCTCCTGGACCGCCTCCTCTGAAAGGTGCAATTGGCGGGAAGGCTAGGCCCCCAGGACGAGGACCCGAAGGTCCTGGAGGTGTTCCTAAGCCAAAACTTAAGCCTTTCTTCTGGGATAAGGTTCAAGCAAACTCAGATCAGGCTATGGTTTGGAATCAGCTCAAAGCAGGATCCTTCCAGTTCAATGAAGAAATGATGGAGTCGCTTTTTGGATATAATGCCGCTCAAGAAAAATCTAAACCCGGAATGAAGAAAGAATCTCGTGAACAAACTCCTCAATATATTCAGATCATTGAACCAAAGAAAGCACAGAATTTATCAATTCTGTTGAAAGCGTTGAATGTAACATTAGAAGAAGTTCGTGATGCACTCCTTGAAGGGAATGAAATACCCCCAGAATTCTTAAACACTTTGTTGAAGATGGCACCAAGTCAAGAGGAAGAACTAAAGCTCAGACTCTTCACAGGGGACCTACACATGCTTGGACCCGCTGACCGATTCTTGAAAGCCATTGTCGACATTCCATTTGCCTTCAAACGAATCGAAACACTACATTACATGTGCACTCTCTCGGATGAACTCATTACTACTAGAGATTCTTTTGGAGTTTTGGAGGTTGCATGTGAGGAACTAAAAAGCAGCAGGCTATTCCTGAAGCTTCTAGAAGCGGTGTTGAAAACAGGAAACAGGATGAACGATGGAACATTCCGAGGCGGCGCGCAAGCTTTCAAACTTGACACGCTGCTGAAGCTCTCTGATGTGAAAGGTGTAGACGGGAAAACCACGCTTCTTCACTTTGTGGTACAAGAAATAATTAGAACAGAGGGAATAAGAGCAATGAGAATGTCAAAAGAGAGCCTAAGCTTTTCGAGCATAAAAACCGACGACCTTCTAGAAGATGTCAACTTAGAGAACGAAGACCAGTACCGGGACCTCGGCCTTAACGTGGTGTCCCGTCTGAGTAGTGAGCTTGAGAATGTCAAGAAAGCAGCGGCTCTGGATGTGGACGGTTTGATATCTACGACGGCCAGACTCGGCCACGGTCTTATAAAGGCCAGAGAATTTGTAAACACGGAACTTAAGACCCTGGAGGATGACCAGGGCTACTACGAAGTCACCAAGAGCTTTGTGGAGAGTGCGGAAGAGGGCGTCGCCAACTTGCTCCGAGAAGAGAAGAAGATCATGGCATTGATAAAGAGCACAGGTGACTACTTTCATGGCAATTCTGGCAAGGATGAAGGCTTGAGGTTGTTTCCGATAGTGCGTGATTTCTTGCTAATGTTGGATAAGGTTTGCAAAGAAATAAAGACTATACCAAAGAAACCACCACCGGCAGCAGCCGCACAGGCACAAGCACAGGCAGCACCACCGGCGGCACCGGCATCAAATAATAATAATGAAAAACAGGAGAGTGGTAGTTCGAAAACTTCAACAGAGACAGGCGCTGCTCCTCCGCCTCCTCCTATTTTTCGCAACCGACTTCCGGTAGTTGCAGAAAGGACGGGTGACTTTAGTTCGGACGATGACAGTCCATAG 2754 0.4561 FDEIIKKHNKHSLEEKRKEAQEELLIQLFDPKSEIFDKDTAELLWTTCWEDLIKIEDVDSCPIQSPSNTNEISLERGIIVQRNIENVINNCQPQLREGFIDCLRRHNPLIHVSKNSLHASYVRLLSSRRNLGHVLLQDVSRAEDVGDESVQTKTKTENTAPKESGSEQNVFVIVGITAVSSFGIAAFVFIFCCRCSRATVDQTDEKPLLSLCRTDYSNGSFNSRNPPQESMKKEDSIETLMSSKILFDDNKNKNLAHEIYSMRLAGPYEISSVGLGGADASAAASARPSMDLKPPPGRVGPPLPLKPPPGRPNPPSDPSIPPPSADENNPPLLPPPAADAPPPPPPPKPSNAPPPPAPPPSRGGGGPPPPPPPGGKGPPPPPPPGAKGPGPGPPPPPAPKGGGGPRPPGPPPLKGAIGGKARPPGRGPEGPGGVPKPKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMMESLFGYNAAQEKSKPGMKKESREQTPQYIQIIEPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLNTLLKMAPSQEEELKLRLFTGDLHMLGPADRFLKAIVDIPFAFKRIETLHYMCTLSDELITTRDSFGVLEVACEELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAMRMSKESLSFSSIKTDDLLEDVNLENEDQYRDLGLNVVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKAREFVNTELKTLEDDQGYYEVTKSFVESAEEGVANLLREEKKIMALIKSTGDYFHGNSGKDEGLRLFPIVRDFLLMLDKVCKEIKTIPKKPPPAAAAQAQAQAAPPAAPASNNNNEKQESGSSKTSTETGAAPPPPPIFRNRLPVVAERTGDFSSDDDSP* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1408 917 MobiDBLite consensus disorder prediction 294 414 - -
Amo08g1408 917 PANTHER FORMIN-LIKE PROTEIN 3 150 324 - -
Amo08g1408 917 Pfam Formin Homology 2 Domain 435 834 IPR015425 -
Amo08g1408 917 Coils Coil 509 529 - -
Amo08g1408 917 PANTHER FORMIN-LIKE PROTEIN 3 14 120 - -
Amo08g1408 917 PANTHER FORMIN-LIKE PROTEIN 3 359 860 - -
Amo08g1408 917 SMART it6_source 429 849 IPR015425 -
Amo08g1408 917 SUPERFAMILY Formin homology 2 domain (FH2 domain) 498 849 - -
Amo08g1408 917 PANTHER FORMIN-RELATED 14 120 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo08g1408 917 PANTHER FORMIN-RELATED 359 860 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo08g1408 917 PANTHER FORMIN-RELATED 150 324 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo08g1408 917 Gene3D Formin, FH2 domain 434 877 IPR042201 -
Amo08g1408 917 MobiDBLite consensus disorder prediction 284 440 - -
Amo08g1408 917 ProSiteProfiles Formin homology-2 (FH2) domain profile. 429 860 IPR015425 -
Amo08g1408 917 MobiDBLite consensus disorder prediction 846 917 - -
Amo08g1408 917 MobiDBLite consensus disorder prediction 862 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1408 Amo-Chr8 22944016 22947367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1408 426 866 FH2 protein (formin) Gene Family AT5G54650 62.640 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1408 - - ahf:112772643 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1232 18 21686198 21689658 Amo08g1408 08 22944016 22947367 hybridization
Amo08g1408 08 22944016 22947367 Amo13g2198 13 36849178 36855806 PCT
Amo08g1408 08 22944016 22947367 Amo03g0327 03 6113542 6120009 PCT
Amo13g2198 13 36849178 36855806 Amo08g1408 08 22944016 22947367 PCT
Amo03g0327 03 6113542 6120009 Amo08g1408 08 22944016 22947367 PCT