Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1401 ATGATGGACCAAATCTATGGTGTTCTCAAACTTAGGATTCAGAGAGGCATTAATCTCGCAATTCGCGATTTGCGTTCTAGTGATCCTTATGTTGTTGTCAGCATGGGTACTCATCAGAAACTGAAAACTAGGATCATGCATAAAGATCTCAATCCTGAGTGGAATGAAGAATTGACCCTTATGGTTGACGATATTAAAACTCCAATACATCTGAAAGTTTTCGACAAAGACATGTTCTCAGCAGATGATGAAATGGGTGAAGCAGTTATAGATATAAGGTCATATGTTAAGTGCTGGAACAAAGGATTGGAAAAACTCCCAGATGGTTGTGTAGTGAAAAGAATTCAGCCAAATGAAAATAACTATCTTGCAGAAGAGAGTCCCTGTATTTGGCACAATGGGACTATAATCCAACGTATGCTCTTAAAATTGAGAAATGTTGAGTGTGGTGAATTACTCTGTGAACTTGAATGGGTTAGTGTACTAGGTTCTATGGGCTTATTAGAGCTACAACAATTACATGCTTAA 528 0.3769 MMDQIYGVLKLRIQRGINLAIRDLRSSDPYVVVSMGTHQKLKTRIMHKDLNPEWNEELTLMVDDIKTPIHLKVFDKDMFSADDEMGEAVIDIRSYVKCWNKGLEKLPDGCVVKRIQPNENNYLAEESPCIWHNGTIIQRMLLKLRNVECGELLCELEWVSVLGSMGLLELQQLHA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1401 175 Gene3D C2 domain 2 164 IPR035892 -
Amo08g1401 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 2 163 - -
Amo08g1401 175 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Amo08g1401 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 93 IPR035892 -
Amo08g1401 175 SMART C2_3c 8 104 IPR000008 -
Amo08g1401 175 Pfam C2 domain 8 94 IPR000008 -
Amo08g1401 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 2 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1401 Amo-Chr8 22864425 22865702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1401 40 167 C2H2 Transcription Factor Family AT1G70790 52.308 1.87e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1401 - - ahf:112769638 341.273