Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1377 ATGTCAGTGGAACATATACTTGGTGCTATCAAACTTAGGATTAAAAGAGGCATTAATCTCGCAATACGCGATACTTATTCTAGTGACCCTTATGTTGTTGTCAAAATGGAAGAACAGAAGTTGAAAACCGCGTACATACGGAAAAATATTAATCCAGTRTGGAATGAAGAATTGACTCTTTATGTTAAGGATGTTGCAACTCCAATAACTATGCAAGTTTTCGACAAAGACATATTCACTGCAGACGATGAAATGGGCGATGCATTTATAGACATAAGGCCGTATATTGGGTGCCATTTGATGGGATTAAAGAGTTTGCCAGATGGATGTGTGGTGAAGAAAATTCAACCAAATAGGACTAACTGTCTWGCTGAAGAGAGCAYATGCTTTTGGCGCAATGGGAGTATAGTCCAACCTATGATTTTAAGACTGAAAAATGTTGAGTGCGGYGAAATAGAATGTGAAATTGAGTGGCGTAATATTCCCGGTTGTAAAGGTTTATCAGGACTAAGATCTTGA 519 0.3776 MSVEHILGAIKLRIKRGINLAIRDTYSSDPYVVVKMEEQKLKTAYIRKNINPVWNEELTLYVKDVATPITMQVFDKDIFTADDEMGDAFIDIRPYIGCHLMGLKSLPDGCVVKKIQPNRTNCLAEESXCFWRNGSIVQPMILRLKNVECGEIECEIEWRNIPGCKGLSGLRS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1377 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 165 IPR044562 -
Amo08g1377 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 160 IPR035892 -
Amo08g1377 172 Gene3D C2 domain 7 162 IPR035892 -
Amo08g1377 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 5 165 - -
Amo08g1377 172 Pfam C2 domain 9 94 IPR000008 -
Amo08g1377 172 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Amo08g1377 172 SMART C2_3c 9 115 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1377 Amo-Chr8 22547337 22548056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1377 40 168 C2H2 Transcription Factor Family AT1G70790 61.832 2.41e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1377 - - gmx:100788395 230.72