Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1317 TATATATTAGTGCTTCATCTCAAAATGGAACTTAAGTACCACCAATTTGGCCTTGTTTGTGTCATAATGCTCTTACCTGTAATGTGTACCTCTCAAGACTCATTTACGTGCTCCAGAGCAACCTATTATGGCAGCCCTGAATGCACTGCCAACCCAAGTACCGGGAGCTTGTGGCTTTGGAGAATATGGAAGGACGGCGAACTCAACGATGGCAGCGTGGCAGGCGTGTCTTGGCTATGGCGGAATGGATCTGGCTGTGGTGCATGCTATCAAGTAACACTTGACATTAGGTGCAAAATTAGTTCAGAACTACTGGCCGATGACTATGGAGCATATGTAGTGGTAACAGACTTCGGCGTGGGAGACAGAACCGACTTCATTATGAGTCCACGTGCTTATTTCCAAGAATTGGCAAACGAAGAAATGGTATCTGCAGAGCTTTTCAAATACGGTGTGGTGGACGTAGAATACAAGAGGGTACCATGTAGATACGGTGGCTATAACATCATAGTCAAGGTGAATGAGCGCAGCTACAACCCACACTACTTAGCCATTGTAACTCTCTATGTTGGTGGAACACAAGACATAACTGCCGTTCAGTTCTGGCAGAAATGGAAGGGCCAATCGCGAAGGGCGGTTTGGGACAGTTTCTGCATGTTGAGAAGCCCACCAAGGGGTGACATAAAGTTAAGGTTCCAAGTGACTGGCAGTGCAGGGGTTTATTGGGTAGAGTCCAAGACCTTTATCACCAGCCCGTGA 759 0.469 YILVLHLKMELKYHQFGLVCVIMLLPVMCTSQDSFTCSRATYYGSPECTANPSTGSLWLWRIWKDGELNDGSVAGVSWLWRNGSGCGACYQVTLDIRCKISSELLADDYGAYVVVTDFGVGDRTDFIMSPRAYFQELANEEMVSAELFKYGVVDVEYKRVPCRYGGYNIIVKVNERSYNPHYLAIVTLYVGGTQDITAVQFWQKWKGQSRRAVWDSFCMLRSPPRGDIKLRFQVTGSAGVYWVESKTFITSP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1317 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 12 251 - -
Amo08g1317 252 Gene3D - 25 162 IPR036908 -
Amo08g1317 252 Gene3D - 163 251 IPR036749 -
Amo08g1317 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 167 IPR007112 -
Amo08g1317 252 Pfam Expansin C-terminal domain 171 243 IPR007117 -
Amo08g1317 252 SUPERFAMILY PHL pollen allergen 168 239 IPR036749 -
Amo08g1317 252 SUPERFAMILY Barwin-like endoglucanases 20 166 IPR036908 -
Amo08g1317 252 PANTHER EXPANSIN-B3 12 251 - -
Amo08g1317 252 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Amo08g1317 252 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Amo08g1317 252 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1317 Amo-Chr8 21484093 21485627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1317 18 251 Expansin Gene Family AT4G17030 51.055 8.10e-73 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1317 - - gmx:100802855 293.893