Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1308 ATGGCGCAATTGCCTCCCAAGATTCCAAATATGTCGCCAACTTGGCCGGACTTCCCTTCCCCTCAGAAAATGCCACCCCCATCTCTCAATGCAAGCCAATATCAGCTTCCTCAGAACCCGTCCTGGGTGGACGAGTTCCTAGACTTCTCCTCTGCCAGACGCGGCGCGCATCGCAGGTCGGTGAGCGACTCGATCACCTTCCTGGAGGTGCCGTTGCTGGCAGGGGAGAATTGTGGCGGAGACGGTGCCGTCCCCCCAAGGGATAATGAGGAGAGTGAATTCGAAAAGTTCGACGATGAACAATTCATGTCGATGTTCACGGACGAGATTGCTAATGGTGGAGGTATTCCGATGCCGCCAACGATGTCGTCTTCAAACACTACAAGCGACGAGAAAGAAACGAGTTACCAGAATGAGGAGGTTAATGTGAAGAAGAATTCGAAGGATGAGGAAGAACAGGAAATGAAATTGAATTTGAAGAATGAAGCGGATGAGGTTGAAAGCCATTGTAAAGTGGAAGAAGAAAGTAATAATGCGCTGCCTTCAAACAACACCAACAATCTTGCTTCTTCCAATGACCGAATTACTGATCCCAAGAGAGTCAAAAGAATTTTGGCAAATAGACAATCTGCACAAAGATCGAGAGTGAGAAAGTTGCAATACATATCAGAATTAGAGAGGAGTGTAACTTCATTACAGGCGGAAGTTTCAGTGCTGTCACCACGGGTTGCATTCTTAGATCATCAGCGTTTGCTTCTAAATGTTGACAATAGTGCTATCAAGCAAAGAATCGCCGCCCTTGCCCAAGACAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAGAACCTTAAGAAGATGGAAAACAATAACAATGCACCATGCTCATCACCGTTACGAGCGTCGCCGCCGTCGCCATCGCCGTCACCAAGGCAGAATGAACAGATTCTCAATGTTTGA 999 0.4715 MAQLPPKIPNMSPTWPDFPSPQKMPPPSLNASQYQLPQNPSWVDEFLDFSSARRGAHRRSVSDSITFLEVPLLAGENCGGDGAVPPRDNEESEFEKFDDEQFMSMFTDEIANGGGIPMPPTMSSSNTTSDEKETSYQNEEVNVKKNSKDEEEQEMKLNLKNEADEVESHCKVEEESNNALPSNNTNNLASSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNLKKMENNNNAPCSSPLRASPPSPSPSPRQNEQILNV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1308 332 Coils Coil 278 298 - -
Amo08g1308 332 Pfam bZIP transcription factor 199 243 IPR004827 GO:0003700|GO:0006355
Amo08g1308 332 MobiDBLite consensus disorder prediction 133 174 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 298 332 - -
Amo08g1308 332 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 311 - -
Amo08g1308 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 197 249 IPR004827 GO:0003700|GO:0006355
Amo08g1308 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 202 217 IPR004827 GO:0003700|GO:0006355
Amo08g1308 332 SUPERFAMILY Leucine zipper domain 199 253 IPR046347 GO:0003700|GO:0006355
Amo08g1308 332 MobiDBLite consensus disorder prediction 175 194 - -
Amo08g1308 332 PANTHER BASIC LEUCINE ZIPPER 34 1 311 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 1 36 - -
Amo08g1308 332 Gene3D - 198 251 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 1 26 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 111 199 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 75 94 - -
Amo08g1308 332 MobiDBLite consensus disorder prediction 118 132 - -
Amo08g1308 332 SMART brlzneu 195 259 IPR004827 GO:0003700|GO:0006355
Amo08g1308 332 CDD bZIP_plant_RF2 200 250 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1308 Amo-Chr8 21289118 21291772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1308 1 276 bZIP Transcription Factor Family AT3G58120 55.960 3.45e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo08g1308 bZIP_1 3.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1308 - - gmx:100815433 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1002 18 16309273 16313150 Amo08g1308 08 21289118 21291772 hybridization