Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1294 ATGGATGATGGAGAAGTTTCAAATGGTGCTTTCCCTCTTCATCACAACAACCAAACTCATGATCCAACTTCTAACAATCCTCCACCTTTGAAAAGGAAGAGAAACCTACCTGGAAACCCTGATCCTGAAGCTGAAGTGATAGCCTTGTCACCCAAGACTCTGATGGCGACAAACAGGTTCGTGTGCGAGATTTGCCTAAAGGGTTTCCAAAGGGATCAGAATCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAGAGAACAACAAAAGAAGTAAGGAAGAGAGTGTACGTGTGCCCGGAGAAAACCTGCGTCCATAACCACCCTTCAAGGGCCTTAGGAGACTTAACAGGGATCAAGAAGCACTTCTGCAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGCGTTATGCTGTACAATCAGATTGGAAAGCACACTCCAAAACCTGTGGTACCAGGGAATACAAATGTGACTGTGGAACCATCTTTTCACGGAGGGACAGTTTCATCACACACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAACGCAGCATCAACCATAAACCACACATTATTAGGTGCTAACAACATTGCTTACACCCTCATGCAGCAGCAAAATCATCATCCTTTGGTTCCTAATAACATGTCAACCCATTTCTCTTCAATTTTCAAGCCAATTTCTTCATCCACTACTGATGAAATAAGCAGCAATAGCCAAACATCTTCTAGACCCTTATCCCTTTGGAACATGGGTCATCACCCTCATGACACAACAACAATAATGCCAATTACTCACAACAATTTGCATGATATTCATCAGCAAATTGGATTTGCTACAAACCCTCCTCCACCATCAATTTGGATGTTTGGAAACAAACATCCCTCCAATGGAAGCCAGCAAGAGATAATAACTAGCACTACAAGTGCTAATTCACTTCCATTAATGAACATTGTCAAGAATAATAATAATAACAATAATAATAATAATAATAATAACAATAATAATCATGTTGCAAACCAGCTTGTAAGTGTTCCTTCGTTGTATAGCACCCAACACCAATCCCATGATCATGATCAAACAACAACAACATCTTCATCAGCAGCAAACATGTCAGCCACAGCTTTATTGCAAAAAGCGGCTCAAATTGGATCAACTTCTTCAACTGATCCATCATCATTTCTTGGGAGCATAGGTTTGAAATGCAGTAACAATAATAACCAAGGGCAAGATGGGAATAACAAATTTTGTGGGATTTACAGTTCAAGTTGGAGTGAGCCAGAGAGCTCCACGGGTGATTTGACACAAATGCCCCCTACAAAAAGAATGCGCGTGCAGAATGAAGATGGCAGTGCAGGGGGACAAACTAGGGATTTTCTTGGTGTTGGCGTGCAAACCATTTGCCACCCTTCATCTATCACTGGCTGGATTTGA 1470 0.4197 MDDGEVSNGAFPLHHNNQTHDPTSNNPPPLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTTKEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTINHTLLGANNIAYTLMQQQNHHPLVPNNMSTHFSSIFKPISSSTTDEISSNSQTSSRPLSLWNMGHHPHDTTTIMPITHNNLHDIHQQIGFATNPPPPSIWMFGNKHPSNGSQQEIITSTTSANSLPLMNIVKNNNNNNNNNNNNNNNNHVANQLVSVPSLYSTQHQSHDHDQTTTTSSSAANMSATALLQKAAQIGSTSSTDPSSFLGSIGLKCSNNNNQGQDGNNKFCGIYSSSWSEPESSTGDLTQMPPTKRMRVQNEDGSAGGQTRDFLGVGVQTICHPSSITGWI* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1294 489 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Amo08g1294 489 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Amo08g1294 489 MobiDBLite consensus disorder prediction 11 30 - -
Amo08g1294 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Amo08g1294 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 480 - -
Amo08g1294 489 MobiDBLite consensus disorder prediction 1 43 - -
Amo08g1294 489 MobiDBLite consensus disorder prediction 361 380 - -
Amo08g1294 489 PANTHER F-BOX ASSOCIATED PROTEIN 17 480 - -
Amo08g1294 489 Gene3D Classic Zinc Finger 93 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1294 Amo-Chr8 21086172 21088863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1294 24 489 IDZ Gene Family AT1G03840 51.670 8.14e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g1294 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1294 K25870 - gmx:100778666 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0990 18 16028817 16031508 Amo08g1294 08 21086172 21088863 hybridization