Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1292 ATGAATCAAGATATAGTTATTGGTCTAATAAATTGTAGAACTGCAGGAGTAGGCAAAGATGGGTTGATCCGTCACTTCTTTCACCGGCCATCCAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGCTGATGGCAGTGAAACAAGGTGGCACAAAACAGGTAAAACTAGACCAGTCTACATCAGTGGCAAGTTGAAAGGCTACAAGAAAATCCTTGTTCTCTACACCAACTACAAGAAGCAAAGGAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAAGAAGGTGAGTTAGTTGTGTCTAAGGTTTTCTACCAGACACAACCTAGACAATGTGCAGGTTCACTACTCATCAAAGATTCATCATCATTCCCTGCTAAACTAAAGGATCAAAGTGGTGTTCATCATCATGAAGTGACTAATAATCATAAGAACAATGGGTTTGTGGAATACTACAATGCATCCTTTATAAGCTTTGCTCAAGGGGAACAACAACATAGGTCAAACAATCCCACATTGATTTCCCATTTTCCTGCTCATGATGGGGCTCCGTTCATTCCTTGA 606 0.4109 MNQDIVIGLINCRTAGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYKKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCAGSLLIKDSSSFPAKLKDQSGVHHHEVTNNHKNNGFVEYYNASFISFAQGEQQHRSNNPTLISHFPAHDGAPFIP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1292 201 Gene3D NAC domain 12 124 IPR036093 GO:0003677|GO:0006355
Amo08g1292 201 SUPERFAMILY NAC domain 20 120 IPR036093 GO:0003677|GO:0006355
Amo08g1292 201 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 14 200 IPR044799 GO:0003700
Amo08g1292 201 Pfam No apical meristem (NAM) protein 21 101 IPR003441 GO:0003677|GO:0006355
Amo08g1292 201 ProSiteProfiles NAC domain profile. 1 120 IPR003441 GO:0003677|GO:0006355
Amo08g1292 201 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 14 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1292 Amo-Chr8 21080982 21082135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1292 13 130 NAC Transcription Factor Family AT4G28500 82.353 4.07e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo08g1292 NAM 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1292 - - gmx:100820039 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0989 18 16022639 16024780 Amo08g1292 08 21080982 21082135 hybridization