Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1290 ATGGGCGTGGACTATTACAAGGTCTTGCAGGTTGATAGAAATGCCACCGAAGATGACCTCAAGAAAGCTTACAGAAAGCTCGCCATGAAATGGCACCCCGACAAGAACCCCAACAACAAAAAAGAAGCTGAAGCCAAGTTCAAGCAAATCTCCGAAGCATATGATGTGCTGAGTGATCCTCAGAAGAGAGCAATCTATGACCAATATGGGGAAGAAGGTTTGAAGGGTCAGGTTCCACCACCTGATGCTGGTTCTGGTGGCGGTGGATCCACCTTCTTTTCCACCAGTGACATCCCGGGGTCGTTTCGGTTCAATCCTCGAAACGCCGATGACATTTTTGCTGAGTTTTTTGGGTTTTCAAGCCCCTTTGGTGGCATGGGAAGGAGCAGTGGCGGTGGCATGAGATCAAGGTTCCCTAATGGGATGTTTGGTGATGACATGTTTGCATCTTTTGGTGAAGGAGGTGGTGGAGCAGGGGTGCACATGAGTCAAGGTGGTCCACGCAAGGCTCCCCCTATTGAGAACAAGCTTCCCTGCACCCTTGAGGAGATATATAAAGGCACCACTAAGAAGATGAAGATCTCCAGGGAAATTATTGATGCTAGTGGCAAAACCATGCCAGTGGAGGAGATCTTGACAATTAATGTCAAGCCTGGTTGGAAGAAAGGAACAAAGATCACCTTCCCGGAGAAAGGAAACGAACAACCAAATGTAACGCCTGCAGACCTTGTTTTCATTATCGATGAGAAACCACACAGCGTCTTCACTCGTGAAGGAAATGATCTGATCACAACTCAGAAGATTTCTCTCGTGGAGGCTCTAACCGGATACACGGTAAACCTTACGACGTTGGATGGTAGAAACTTAACCATACCCATCAACAGTGTCATCCATCCAGATTATGAGGAGGTCGTCCCAAGGGAAGGGATGCCGCTTCCAAAGGATCCGTCAAAGAAAGGAAACTTGAGGATTAAATTCAACATCAAGTTCCCAAGTCGGCTCAGTGCCGACCAGAAATCTGGAATCAAGAAACTCCTGGCTGGTTGA 1047 0.4766 MGVDYYKVLQVDRNATEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGSGGGGSTFFSTSDIPGSFRFNPRNADDIFAEFFGFSSPFGGMGRSSGGGMRSRFPNGMFGDDMFASFGEGGGGAGVHMSQGGPRKAPPIENKLPCTLEEIYKGTTKKMKISREIIDASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHSVFTREGNDLITTQKISLVEALTGYTVNLTTLDGRNLTIPINSVIHPDYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPSRLSADQKSGIKKLLAG* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1290 348 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Amo08g1290 348 CDD DnaJ 4 59 IPR001623 -
Amo08g1290 348 Gene3D DnaJ domain 3 131 IPR036869 -
Amo08g1290 348 Pfam DnaJ C terminal domain 173 331 IPR002939 -
Amo08g1290 348 Pfam DnaJ domain 4 67 IPR001623 -
Amo08g1290 348 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 347 - -
Amo08g1290 348 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Amo08g1290 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 340 IPR008971 GO:0006457|GO:0051082
Amo08g1290 348 PRINTS DnaJ domain signature 6 24 IPR001623 -
Amo08g1290 348 PRINTS DnaJ domain signature 24 39 IPR001623 -
Amo08g1290 348 PRINTS DnaJ domain signature 42 62 IPR001623 -
Amo08g1290 348 PRINTS DnaJ domain signature 62 81 IPR001623 -
Amo08g1290 348 Gene3D - 172 250 - -
Amo08g1290 348 CDD DnaJ_C 171 334 - -
Amo08g1290 348 MobiDBLite consensus disorder prediction 72 92 - -
Amo08g1290 348 Gene3D - 252 332 - -
Amo08g1290 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 262 IPR008971 GO:0006457|GO:0051082
Amo08g1290 348 SMART dnaj_3 3 62 IPR001623 -
Amo08g1290 348 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 347 - -
Amo08g1290 348 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1290 Amo-Chr8 21036719 21040925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1290 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 3.42e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1290 K09510 - gmx:100778672 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0987 18 15974711 15978748 Amo08g1290 08 21036719 21040925 hybridization