Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1288 ATGCTTGCGGTGTCACCTTTGAGGACCAACAGAGATGATGAAATCCAAGGACAGGACATGGAGACCTTATCCATCATTGGAGAAGACGACTTTGCTGAATTATCCGAGGGCAACTTGTTGGAAAGCATCAACTTCGACGATCTCTTCGCCGGCATCAACCACGCAGATGTCTTGCCGGATCTCGAAATGGATCCTGACATCTTCGCCGACTTCTCACTCAACGCCGCGAACAATTCTTCATCCCTAGTCTTGAATGGTTGTGGTAAATCGGCTTCTTCGGAATCCGGCTCGAGTAGTCGAGGGGAGGAGATAGTGAGCAAAAGGGATGGATCCATCGTAGTGAATCCATCCCCTAGTAATAAAGAAGGTGATAATAAAGGAAGAAAACCATCATCCTCCTCATCATGTCAATCAAAGAATCCTCATCAAACCAAGAAAAAGGTTAAGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTTCAAGCAGTGGAGCAGCTGGGAGTTGATAAAGCAGTCCCTTCAAGGATTCTAGAGATCATGGGAATTGACTGCCTCACCCGCCATAACATCGCTAGCCACCTTCAGAAATATCGATCACATAGGAAGCATATACTAGCTCGGGAGGCTGAAGCAGCAAGTTGGAGTCAACGGAGGCAGATGTATGGTGGAGGGAGAGGGAAGAGAGAGGTGAGCCCTTGGGTTGCACCAACCATTGGTTTTCCTCCCACTCCAATTACATCAATGCCGCCCCAGTTTAGACCCTTACATGTGTGGGGTCATCCCACCATGCACATGTGGCCGCCTAAACCTCATCAGCCACCGCCTCCTGCACCTTGGCCTTCAGACCCTTCTTATTGGCACCACCCTCACCACCAAAGGGCTCATCAAAAGGCAGTACCACCAGCAACACCGTGTTTTCCACAACCTCTGACAACAACGAGATTTGGTTCTCCGCCAACCACCACCGTGGCGGGTATCCCACCACCACAGCGTGCCATCTATAAAGTAGATCCCGGCATGCCCAAGCCCCTAGTTGACTTCCATCCGTCAAAGGAAAGCGTAGATGCTGCGATTGGTGATGTATTATCAAAACCATGGCTGCCACTGCCACTTGGGCTTAAAGCTCCAGCGGTAGAGTGTGTGGTGGGTGAGTTACAGAGACAAGGAATTCCAAAAATTCCACCCGCAACTCCTGTGCTTAATTAA 1212 0.4983 MLAVSPLRTNRDDEIQGQDMETLSIIGEDDFAELSEGNLLESINFDDLFAGINHADVLPDLEMDPDIFADFSLNAANNSSSLVLNGCGKSASSESGSSSRGEEIVSKRDGSIVVNPSPSNKEGDNKGRKPSSSSSCQSKNPHQTKKKVKKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHILAREAEAASWSQRRQMYGGGRGKREVSPWVAPTIGFPPTPITSMPPQFRPLHVWGHPTMHMWPPKPHQPPPPAPWPSDPSYWHHPHHQRAHQKAVPPATPCFPQPLTTTRFGSPPTTTVAGIPPPQRAIYKVDPGMPKPLVDFHPSKESVDAAIGDVLSKPWLPLPLGLKAPAVECVVGELQRQGIPKIPPATPVLN* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1288 403 Gene3D - 144 206 - -
Amo08g1288 403 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Amo08g1288 403 SUPERFAMILY Homeodomain-like 149 205 IPR009057 -
Amo08g1288 403 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 399 - -
Amo08g1288 403 MobiDBLite consensus disorder prediction 86 151 - -
Amo08g1288 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 202 IPR006447 GO:0003677
Amo08g1288 403 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 399 IPR044825 GO:0003700|GO:0045893
Amo08g1288 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 204 IPR017930 -
Amo08g1288 403 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1288 Amo-Chr8 21016765 21022574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1288 1 289 G2-like Transcription Factor Family AT5G44190 43.631 6.19e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo08g1288 Myb_DNA-binding 5.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1288 - - qsu:112013245 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0986 18 15941237 15947152 Amo08g1288 08 21016765 21022574 hybridization