Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1285 ATGGCTTCGTTATTTAAGGATCCAGCGAAGCTTTCAGCTTATCGAGATAGAAGATTTCCCGGAAATCAGGAGGAGTTTGAGCATGCTCTGCAGACATCAACAACGGTTTATGTTGGAAATATGTCATTTTACACGACAGAGGAGCAAGTTTATGAGCTGTTTTCCCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGATAAGAACTCGAAAACACCATGCGGCTTCTGTTTTGTTCTATATTACTCACGTGAAGATACAGAGGATGCTTGCAAATATATAAGTGGGACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGATTGGGGGTTCCAAGATGGAAGACAATGGGGCCGTGGTCGTAGTGGTGGCCAGGTTCGTGATGAATACCGAACTGATTATGATCCTGGTAGAGGTGGTTATGGGAAGTTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGACTATGGCGCTGGTTCTTTGGGCTCTTTCCCACCTGTTATTCCGCATTCATATGGTAGACATGGCGGAGGCCATGGCCATGCTCATGGTCATGGTGGATCCCATCGGCATGGTAGAGACTACCATAGGAAGAGATACAGAGATGATGACCGCCACCCTCCACACGAATCCTCAAAGAGAACATCAGATCATGAATCTCGGAGAAATGCTGACCCTGATTCCAGACCGGAAAAAAATCCACGATTTCGCGAGAGTGGTGATTCTGACGAGGATGAGGAAGATGATCGAAAGAGACGGGCTTAA 777 0.4607 MASLFKDPAKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPHSYGRHGGGHGHAHGHGGSHRHGRDYHRKRYRDDDRHPPHESSKRTSDHESRRNADPDSRPEKNPRFRESGDSDEDEEDDRKRRA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1285 258 CDD RRM_NCBP2 36 113 IPR034148 -
Amo08g1285 258 SUPERFAMILY RNA-binding domain, RBD 22 144 IPR035979 GO:0003676
Amo08g1285 258 SMART rrm1_1 35 108 IPR000504 GO:0003723
Amo08g1285 258 MobiDBLite consensus disorder prediction 171 258 - -
Amo08g1285 258 MobiDBLite consensus disorder prediction 124 138 - -
Amo08g1285 258 MobiDBLite consensus disorder prediction 120 139 - -
Amo08g1285 258 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 211 IPR027157 GO:0000339|GO:0005846|GO:0045292
Amo08g1285 258 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 211 - -
Amo08g1285 258 MobiDBLite consensus disorder prediction 201 258 - -
Amo08g1285 258 MobiDBLite consensus disorder prediction 180 200 - -
Amo08g1285 258 Gene3D - 6 150 IPR012677 -
Amo08g1285 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Amo08g1285 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1285 Amo-Chr8 20984529 20987908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1285 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.848 7.30e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1285 K12883 - gmx:100776217 387.882