Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1276 ATGCGAAACTCATTATCGTCGATGACTACCAAGGGAAAGCATACCGCTAGCAAGGAAAAGCATCCCGCTAGCAAGAAGGAGCCAAACAATAATATTGCCAAGGAGGTTCATTACAGGGGTGTAAGGAAGAGGCCATGGGGCCGTTACGCTGCTGAGATCCGCGATCCCGGAAAGAAGAGCCGCGTCTGGCTCGGAACATTCAACACAGCTAAAGAAGCCGCCATGGCCTACGACGCCGCTGCCAGGCAATTCCGCGGCGCCAAGGCCAAGACCAATTTCCCTTACGCTTCCCGCCGCGAAAACGAGAACATCTTTGCTGTCGCCGGCAGGAAATGCGACATCGTTGAGTCTTATCCGATTGATTCTGCGCCTAAGCGTGACGTGACACTGCGGACAGAAGTAGATCGATTTTTCCCGTTTGTTCCATACTGTGGTGGTGAAGCGGTGCGTCCCGTTTATCTGCCTGAACCGGTTGGTAGAGTTGAGTTCGTTGGCGAGCAGAGTTGTTGTCCTTTCCGGTTGGAGCCGGCAAGGATGAGTGAGTTTAATGCACAGTCTGGGAGTGGAGCCCAGAGTAACTTGGATTCAACATCAGCCGTCGATTGCAAACCAAATGGAGTTCTTAATCTTGATCTGAAGCTCGCTCTACCCGTTGGCCATTGA 663 0.5249 MRNSLSSMTTKGKHTASKEKHPASKKEPNNNIAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFNTAKEAAMAYDAAARQFRGAKAKTNFPYASRRENENIFAVAGRKCDIVESYPIDSAPKRDVTLRTEVDRFFPFVPYCGGEAVRPVYLPEPVGRVEFVGEQSCCPFRLEPARMSEFNAQSGSGAQSNLDSTSAVDCKPNGVLNLDLKLALPVGH* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1276 220 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Amo08g1276 220 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Amo08g1276 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 113 - -
Amo08g1276 220 MobiDBLite consensus disorder prediction 13 37 - -
Amo08g1276 220 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Amo08g1276 220 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Amo08g1276 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 113 - -
Amo08g1276 220 MobiDBLite consensus disorder prediction 1 37 - -
Amo08g1276 220 Gene3D AP2/ERF domain 36 96 IPR036955 GO:0003700|GO:0006355
Amo08g1276 220 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Amo08g1276 220 CDD AP2 37 96 IPR001471 GO:0003700|GO:0006355
Amo08g1276 220 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1276 Amo-Chr8 20862716 20863656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1276 30 218 AP2-EREBP Transcription Factor Family AT5G44210 42.132 2.56e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g1276 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1276 K09286 - qsu:112001675 154.066