Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1273 ATGCCTGCACAGAAGCGCCCTTACCCTGACACTCTCGACGACGCCGACGACTCCTCYAACCACCTCTTCCCKCATCGCCACCCCAAGCACCACCGCGACCGCACCCTCAAGCCCCACCATCCAGATGAAGATGCTGCTGGAGCCCACAAGGAAGAGGACGAGCAAGAACAAGAGCAAGGGGATGCTGAGCAAGAAGATGAGGAAGATGAGCAACAAGGAGCAGAAGAAGAAGAWGATGATGATGAAGAAGAAGAAGAAGAGGACGATGACGAAGATGAAGATGAAGGTGAGGGAGATGAAGAAGATGAAGAAGAAGGGAAACACAACGACGAGGGTAAACCCGATGATTCTGACGACACCCCATCTTCGGATTCTGAAGAAAAACCAGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCYCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGARGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCRGTGGTAGTAGTAGCAAAASCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGTTAGATATCCATCTCATGCTTTATTCTYTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGAAATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG 1575 0.4546 MPAQKRPYPDTLDDADDSSNHLFPHRHPKHHRDRTLKPHHPDEDAAGAHKEEDEQEQEQGDAEQEDEEDEQQGAEEEXDDDEEEEEEDDDEDEDEGEGDEEDEEEGKHNDEGKPDDSDDTPSSDSEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGXGSSSKXSRSSRVSKMVDFLRNLDENADELDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLKCDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1273 524 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Amo08g1273 524 SMART ring_2 145 184 IPR001841 -
Amo08g1273 524 Pfam Zinc finger, C3HC4 type (RING finger) 144 184 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 9 23 - -
Amo08g1273 524 ProSiteProfiles Zinc finger RING-type profile. 145 185 IPR001841 -
Amo08g1273 524 Coils Coil 79 91 - -
Amo08g1273 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 216 IPR013083 -
Amo08g1273 524 MobiDBLite consensus disorder prediction 1 129 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 36 55 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 246 382 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 336 350 - -
Amo08g1273 524 PANTHER OS11G0578200 PROTEIN 41 521 IPR044592 -
Amo08g1273 524 SUPERFAMILY RING/U-box 132 199 - -
Amo08g1273 524 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 41 521 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 107 129 - -
Amo08g1273 524 Coils Coil 211 242 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 56 106 - -
Amo08g1273 524 Coils Coil 48 77 - -
Amo08g1273 524 MobiDBLite consensus disorder prediction 258 280 - -
Amo08g1273 524 CDD RING-HC_RING1_like 145 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1273 Amo-Chr8 20811189 20816848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1273 138 208 C3H Transcription Factor Family AT3G23060 35.135 4.44e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1273 K10695 - gmx:100776547 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0973 18 15745836 15751557 Amo08g1273 08 20811189 20816848 hybridization