Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1270 ATGCGGTGTTGTCAAGCTGAGAAGTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAGGGTGTGTGAGTACCATGCCAAGGCTCAGGTGGTTCTTGTTTCCGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGATAGGTGAATTTGATGACACAAAAAGAAGTTGCCGGAGGCGTTTGGCCGGACACAACCAACGGCGAAGAAAGAACTGTGATTCTCAAGCAGAAGGGTCGAGGCGCAAAGGGATATGTCCTCGGTTGAAGAAGGACACTGCCTGTGGAGATGATAGGAGCAGAATTCAGATTGCAATCCAAGAGAGTGGAGCTTATAAACATTTCCAGATAAGATGA 375 0.4907 MRCCQAEKCKADLEEARQYHRRHRVCEYHAKAQVVLVSGIRQRFCQQCSRFHEIGEFDDTKRSCRRRLAGHNQRRRKNCDSQAEGSRRKGICPRLKKDTACGDDRSRIQIAIQESGAYKHFQIR* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1270 124 ProSiteProfiles Zinc finger SBP-type profile. 1 78 IPR004333 GO:0003677
Amo08g1270 124 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1 124 - -
Amo08g1270 124 Gene3D - 1 65 IPR036893 GO:0003677|GO:0005634
Amo08g1270 124 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 124 IPR044817 GO:0003677
Amo08g1270 124 SUPERFAMILY SBT domain 2 81 IPR036893 GO:0003677|GO:0005634
Amo08g1270 124 Pfam SBP domain 4 77 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1270 Amo-Chr8 20781986 20782757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1270 2 124 SBP-box Gene Family AT3G15270 54.400 2.54e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo08g1270 SBP 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1270 - - ccaj:109810441 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0972 18 15730606 15731784 Amo08g1270 08 20781986 20782757 hybridization