Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1264 ATGGCCGATGAACCAATGCCCACTCGCTGGTCCTTCCAGGACTTCAAATTGAATTATGATGCGATGTTTGGGAGGAAGAAAGTGGTGGAGAATGGTGAGGCAGCTGATAAAGCTGTTGGTAATGGAAACTTATTGAACCATGCATCCAACGGCAATCTGCAAGCTAAAAGATCATCTGATATGACAATCTTTGAGCAGTTTCAGAGCCAGGGGCAGAATCCGGCGCAGACAAATGGCTTTTCACCAAACCATGGGGACGAAAGGCCGCAAAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAGATGCGTGCTTTAGCAGAGAGCTTAAGTAGGGATATAATTCGTGGGAGTCCAAATGTGAAGTGGGAAAGCATCAAGGGGTTAGGGAATGCCAAACTTTTGCTAAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCTCCATGGAAAGGCATTCTCCTTTTTGGCCCACCAGGGACAGGAAAGACAATGCTTGCAAAGGCTGTTGCAACAGAGTGCCAGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGTGATTCCGAGAAGTTGATAAAGGTGTTATTTGAGCTTGCAAGACACCATGCCCCCTCAACCATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGCGGTGAAGCACGCAGTGAACATGAAGCAAGTAGACGACTAAAAACTGAACTACTCATACAGATGGACGGTTTGGCCAAGACTGATGAGCTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGTCTTGAGAAGCGAATCCTTGTACCACTCCCAGAACCAGAAGCAAGAAGATCCATGTTCGAGGAACTCCTTCCTCCACAGCCTGATGAGGAAGAGATCCCCTATGATTTGCTAGTGGAGCGGACCGAAGGATATTCAGGGTCAGATATCCGGTTACTCTGCAAAGAGACAGCAATGCAGCCTTTGAGACGCCTAATGTCTCAACTTGAACAGAGACAAGAGGTGGTACCGGAAGAAGAGTTGCCAAAAGTTGGGCCAATCAGGTATGAAGATATAGAAGCAGCATTGAAAAACACAAGGCCATCTGCTCACCTACATGCCCATAAATATGAAAAGTTTAATGCTGATTATGGCAGTCAAATACTTCACTGA 1212 0.453 MADEPMPTRWSFQDFKLNYDAMFGRKKVVENGEAADKAVGNGNLLNHASNGNLQAKRSSDMTIFEQFQSQGQNPAQTNGFSPNHGDERPQKSLLPPFESAEMRALAESLSRDIIRGSPNVKWESIKGLGNAKLLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECQTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLAKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPPQPDEEEIPYDLLVERTEGYSGSDIRLLCKETAMQPLRRLMSQLEQRQEVVPEEELPKVGPIRYEDIEAALKNTRPSAHLHAHKYEKFNADYGSQILH* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1264 403 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 401 - -
Amo08g1264 403 Pfam AAA+ lid domain 316 352 IPR041569 -
Amo08g1264 403 PANTHER AAA DOMAIN-CONTAINING 9 401 - -
Amo08g1264 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Amo08g1264 403 MobiDBLite consensus disorder prediction 69 92 - -
Amo08g1264 403 CDD AAA 153 290 - -
Amo08g1264 403 SMART AAA_5 155 292 IPR003593 -
Amo08g1264 403 MobiDBLite consensus disorder prediction 69 85 - -
Amo08g1264 403 Gene3D - 118 394 IPR027417 -
Amo08g1264 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 386 IPR027417 -
Amo08g1264 403 Gene3D - 291 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1264 Amo-Chr8 20695715 20701007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1264 153 362 Calmodulin-binding Proteins AT3G56690 35.681 5.15e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1264 K07767 - gmx:100794098 686.026