Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1254 ATGGATCATCATCAGCAGCAGCAGCAACAAGGAAGTGAACCTTCTACAACAACCAAAGTTGAAAGAAAGATCATAGAGAGAAACAGAAGAAATAAAATGAAGGATCTCTACTCCAAACTCAACTCTCTTCTCCCAAGCTATAGCCCCACGGAAGTGTTACCATTGCCTGATCAAATAGATGAAGCCGTGAAATATATCAAAAGCTTAGAGAAGAAGGTGAAGATGGCAAAGGAGAAGAAGGAGAGGTTGCTAAAAGGGAGGAATAACAAGAAGAGATCTCGCGGTTTCGATGAGAAAAATATTACAAAATCTCCAATGATAGATGTTCATGAAATGGGTAATTCCTTGCTTCAAGTGGTCTTGACATGCGGGTTTGAGAACAAGTTCCTTTTCAATGAGATTATTCGCATATTGCATGAAGAGAAGGTTGAGATTGTTAGTGCCAATTCTTCTTCACAACCTGGAGATTCAATGATTCATGTTTTGCATGCAGAGATTCCTTCCGCATTCCAGCAATTTGGAGCGGCAAGAGTGAGTGAGAGATTGAAGAGGTTTGTGAATGGATCAATCAGTGATGTGGAAATAGATCCAGGGTTTTGGGATGATTTTGAAATTGATACTGACATTTGGGAGCTTCCAGATCTTTCATCAGTAGTAAGCAAGGGTTTTTCAAATCCTTTGTAA 684 0.3962 MDHHQQQQQQGSEPSTTTKVERKIIERNRRNKMKDLYSKLNSLLPSYSPTEVLPLPDQIDEAVKYIKSLEKKVKMAKEKKERLLKGRNNKKRSRGFDEKNITKSPMIDVHEMGNSLLQVVLTCGFENKFLFNEIIRILHEEKVEIVSANSSSQPGDSMIHVLHAEIPSAFQQFGAARVSERLKRFVNGSISDVEIDPGFWDDFEIDTDIWELPDLSSVVSKGFSNPL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1254 227 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Amo08g1254 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 85 IPR036638 GO:0046983
Amo08g1254 227 SMART finulus 23 75 IPR011598 GO:0046983
Amo08g1254 227 MobiDBLite consensus disorder prediction 1 31 - -
Amo08g1254 227 Gene3D - 7 96 IPR036638 GO:0046983
Amo08g1254 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Amo08g1254 227 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 15 193 IPR015660 GO:0003700|GO:0006357
Amo08g1254 227 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 15 193 - -
Amo08g1254 227 Coils Coil 59 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1254 Amo-Chr8 20541995 20543052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1254 20 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.640 8.38e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g1254 HLH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1254 - - aip:107610492 294.278