Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1252 ATGGCTCATCAGCAGAGAGGTCAAGCTTCTTCTTCAACCAAAATGGAAAGGAAGATCATAGAGAGAAACAGAAGAGAACAAATGAAGAACCTTTGTTTCACGCTCAATTCTCTTCTCCCTAACTTCAACCCCAAGCAAACATTGCCACCACGTGTTGACCAAATAGATGAGGCCATCATCTACATCAAAACCCTAGAATCAAGGGTTGAGATTGCTAAGGAGAAGAAAGAAAGCTTATTAAACAAGGGAATGAAGAAGAGACCTCATGATTTAGCAGGTAGCAGTGCCTTTGATGATGAAACTCAAGGAACAAGCCTAAAACCCCCAACTATTGAGATTCATGAACGTGGTTCCATGTTAGAGATAGTTCTTATGATTTCTGGCTTTGATAACCAATTCATCTTCAGTGAAATTATTCGCATATTGCATGAAGAGAATATTGAGGTCCTTAGTGCAATTTCTTCTCGCGCTGGAGATTCAATGATTCATGTTGTGCACGCAGAGAATCATCTCTATCAATTAGGAGCAACGAAAGAAATAAGTGAGAGATTAAAAAGGTTTGTGGACGCACATTGTTTGCAGGACATTCAAGGGGCACAGGGGCCATAA 609 0.4039 MAHQQRGQASSSTKMERKIIERNRREQMKNLCFTLNSLLPNFNPKQTLPPRVDQIDEAIIYIKTLESRVEIAKEKKESLLNKGMKKRPHDLAGSSAFDDETQGTSLKPPTIEIHERGSMLEIVLMISGFDNQFIFSEIIRILHEENIEVLSAISSRAGDSMIHVVHAENHLYQLGATKEISERLKRFVDAHCLQDIQGAQGP* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1252 202 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 194 - -
Amo08g1252 202 MobiDBLite consensus disorder prediction 85 108 - -
Amo08g1252 202 SMART finulus 18 71 IPR011598 GO:0046983
Amo08g1252 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Amo08g1252 202 Coils Coil 62 82 - -
Amo08g1252 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 65 IPR011598 GO:0046983
Amo08g1252 202 Pfam Helix-loop-helix DNA-binding domain 14 66 IPR011598 GO:0046983
Amo08g1252 202 Gene3D - 4 92 IPR036638 GO:0046983
Amo08g1252 202 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 194 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1252 Amo-Chr8 20468208 20469767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1252 2 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.458 2.16e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g1252 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1252 - - gmx:100805461 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1252 08 20468208 20469767 Amo03g0569 03 10426434 10427749 PCT
Amo03g0569 03 10426434 10427749 Amo08g1252 08 20468208 20469767 PCT