Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1244 ATGGATTTACATCAGTATTTTGAAGGGGGTATGCCCCAAATGGATTATTTTGAAGATAATTCATCTCTGGAAATGTGGAAATGTGCTAGTGATAGTGATGCCATTGCAGATTCAGATGGAAATGCCTCTGGTGGTGGCTTTGAATGCAACATCTGCCTCGAATGCGTGCAGGATCCGGTAGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAGTGGCTTAATTTCCGAAACATCTCTTCCGAAACCGGAGAGAAGAGGAAGCCACAATGTCCAGTATGCAAGTCGGAAATTTCTCAGTCCTCCCTTGTTCCCCTATACGGCCGTGGCCAAGCTAGCTCAGCCTCAGAAGACAAGGCTCACCAAGCCGGAGTTGTCATACCGCGGCGACCCCTTGGTCCAGGATCATCAAGTACTGCAAACGTTTCCCAACCTTCATCTCGAGTTTATCATTCCCATTATCCTGATCCTTCTCAACAATTCAACTCCATTCCAGGTAGTTACTCTTCGCCGCTAACAAACTCCTTTAACACCACATATGGAATCATTGGCGAAACAATATATGCAAGGGTATTTGGAAACCAGGTGACCAACATATACACATACCCCAATTCATACCATCTTGCTGGGAACAATAATCCAAGGATTAGAAGGTATCTAATGGAAGCTGATAGATCACTTAGCAGAATATGTTTCTTCCTCTTTTGTTGCACGGTTTTGTGTCTTCTCTTATTCTGA 747 0.4444 MDLHQYFEGGMPQMDYFEDNSSLEMWKCASDSDAIADSDGNASGGGFECNICLECVQDPVVTLCGHLYCWPCIYKWLNFRNISSETGEKRKPQCPVCKSEISQSSLVPLYGRGQASSASEDKAHQAGVVIPRRPLGPGSSSTANVSQPSSRVYHSHYPDPSQQFNSIPGSYSSPLTNSFNTTYGIIGETIYARVFGNQVTNIYTYPNSYHLAGNNNPRIRRYLMEADRSLSRICFFLFCCTVLCLLLF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1244 248 ProSiteProfiles Zinc finger RING-type profile. 49 98 IPR001841 -
Amo08g1244 248 Pfam Zinc finger, C3HC4 type (RING finger) 49 97 IPR018957 GO:0046872
Amo08g1244 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo08g1244 248 CDD RING-HC_AtRMA_like 47 99 - -
Amo08g1244 248 SUPERFAMILY RING/U-box 46 110 - -
Amo08g1244 248 MobiDBLite consensus disorder prediction 131 153 - -
Amo08g1244 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 248 - -
Amo08g1244 248 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Amo08g1244 248 MobiDBLite consensus disorder prediction 137 153 - -
Amo08g1244 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 126 IPR013083 -
Amo08g1244 248 SMART ring_2 49 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1244 Amo-Chr8 20315087 20317667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1244 43 248 C3H Transcription Factor Family AT4G28270 40.187 4.54e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1244 K10666 - gmx:100785491 329.717