Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1238 AGGTTGACCCCACCATTCTGTTGCACTATAAAGAAGACCCAAAACCTCCCCAACGGTCTTCATTCATACATACCACACCAAACCCCGAAAAAACTTCCGCCGGCGACACTTCACTTCCGCCGCATTTTTTCCCTCGGGATCCGAGCTCGCCGGAGCTTTCATTTCGCAGTCAGTCACCACAATGCAGCTCCACCACCGTGTCACCGCCGTGTCATTTGCGGCCAGAAACAACGGCCACGGCACCGCATCCTCGATCCACATTGGCATGCTGGCACCGCCACGTGGTACGGCGATCCCGAAGGAGACGGTAGCACCGGAGGGGCGTGTGGATATGGAACGATGGTGGATGTGAAGCCGTTGAAGGCGAGGGTGGGTGCGGTGGGGCCGGTGCTGTACAAGAACGGGGAAGGGTGCGGAGAATGCTACAAGGTGAAGTGCTTGGACCCAACCATATGCTCCAAGCGAGCGGTGACGGTTATAATCACGGACGAGTGCCCTGGTTGTCCCTCTGATCGAACCCACTTTGACCTCAGCGGTGCCGCATTTGGCCGAATGGCGGTTTCCGGCGAGAATGGTCAGCTCAGGAACCGAGGCGAAATCCCAGTCATATACCAAAGAACACCTTGCACATATCCAGGCAAAAACATTGCCTTCCGTGTCAATGAAGGTTCTACACCCTTTTGGCTATCACTCTTGGCAGAGTGGGAGGATGGAGATGGAGACATCAGCTCCATGCATATACAAGAAGTAGGGTCAAGTGAGTGGCTGGAAATGAAACATCTGTGGGGTGCAAATTGGTGCATCATTGCGGGTCCTTTAAGAGGACCTTTCTCTGTTAAACTAAGCACATCGTCAGGGAGAAGCCTCACTGCCAGGGATGTTATTCCAAGCAACTGGTCACCGAAAGCCACTTATACCTCTCGCTTGAATTTCATTCCTTAG 942 0.5372 RLTPPFCCTIKKTQNLPNGLHSYIPHQTPKKLPPATLHFRRIFSLGIRARRSFHFAVSHHNAAPPPCHRRVICGQKQRPRHRILDPHWHAGTATWYGDPEGDGSTGGACGYGTMVDVKPLKARVGAVGPVLYKNGEGCGECYKVKCLDPTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYQRTPCTYPGKNIAFRVNEGSTPFWLSLLAEWEDGDGDISSMHIQEVGSSEWLEMKHLWGANWCIIAGPLRGPFSVKLSTSSGRSLTARDVIPSNWSPKATYTSRLNFIP* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 105 123 IPR007118 GO:0005576
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 128 146 IPR007118 GO:0005576
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 293 307 IPR007118 GO:0005576
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 197 213 IPR007118 GO:0005576
Amo08g1238 313 PRINTS Expansin/Lol pI family signature 87 102 IPR007118 GO:0005576
Amo08g1238 313 Gene3D - 210 308 IPR036749 -
Amo08g1238 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 106 214 IPR007112 -
Amo08g1238 313 PANTHER EXPANSIN-LIKE PROTEIN B1 80 313 - -
Amo08g1238 313 Gene3D - 76 209 IPR036908 -
Amo08g1238 313 PRINTS Major pollen allergen Lol pI signature 146 156 IPR005795 GO:0005576|GO:0019953
Amo08g1238 313 PRINTS Major pollen allergen Lol pI signature 283 300 IPR005795 GO:0005576|GO:0019953
Amo08g1238 313 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Amo08g1238 313 PRINTS Major pollen allergen Lol pI signature 218 233 IPR005795 GO:0005576|GO:0019953
Amo08g1238 313 PRINTS Major pollen allergen Lol pI signature 234 249 IPR005795 GO:0005576|GO:0019953
Amo08g1238 313 Pfam Lytic transglycolase 129 203 IPR009009 -
Amo08g1238 313 SUPERFAMILY Barwin-like endoglucanases 86 213 IPR036908 -
Amo08g1238 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 227 307 IPR007117 -
Amo08g1238 313 PANTHER EXPANSIN-B3 80 313 - -
Amo08g1238 313 SMART dpbb_1 124 204 IPR007112 -
Amo08g1238 313 Pfam Expansin C-terminal domain 216 296 IPR007117 -
Amo08g1238 313 SUPERFAMILY PHL pollen allergen 214 307 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1238 Amo-Chr8 20240658 20243140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1238 80 249 Expansin Gene Family AT4G28250 71.765 8.95e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1238 K20628 - gmx:100780112 436.802