Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1234 ATGGATGAAGCTAATAATAATAATAAGAACAGCAACAGTGGCAGCAGGTTCAGGAACATGGGTGTGGATGATGACAGTGATGCACACAAGGTTTTTGATGAAATGAATGATCCAACCTTCTTTCAGAGGGCTCAATGGAAGCCAGTTTTTGATGAAGCTTCCGTCTTACATAACAGACCTCTCAAGAAGATTCGAAGCCCTCAACGTTCTTCTTCCCTTCAACAACCTCTTCCTTCTCCTTCTTCTTCTTCTTCCTCCTCTGTTCCTCCATCTTCACAATCATCAAGAATAGTGTTTCCTTTTGCGTTTGATCCCTCACAACAGAACCCCATGCAAATGCAGTTCCCTTACCAATACGGAACAAGAACAGATACCCCTTTCATGCACCCACCAATGCAACCAACAACGCACAACAACCAAATGATTTCTTTCGGTTCTCAATCTCATCATCCGCAACAGCAACATAACATGAACATGGTGAACACAGTGTATCAACCGCAAATGCTACAACAACAGAATCAGCAGCAGATTCTTCAGTATTGGAGCGAAGCACTGAACCTAAGTCCAAGAGGGAGAATGATGATGATGAACAACAGGTTGAGGCCACCGTCTCAGCCGTTGAACACGACGAAGCTTTATAGAGGTGTGAGGCAACGCCATTGGGGGAAATGGGTAGCTGAGATTCGTCTACCTCGAAACAGAACTCGACTCTGGCTCGGCACCTTCGACACTGCAGAAGATGCTGCCATGGCCTATGATCGCGAGGCTTTCAAGCTTAGAGGTGAGAATGCACGCCTCAACTTCCCTGAACTCTTCCTCAACAAAAAGGATGATGATAATAATGATAAGAATCAAGAAGAAGCACCTTCTGATGCTCCTACTACTTCATCTCCTTCCTCTTCTATTACAACAACAAAGCAAGTTGAAGAGGTTTCTGAAGGAGGGAATGCGAATGTGGAGAAGAGTCCCATAGAAGAGGGTAATGAGAATTCAAGAAGTGTGAGTGAAGGGGTTTCTCAAGAACTGGTGTGGGGAGAGATGTCTGCATGGTTCAATGCTATTCCTTCAGGTTGGGGTCCAGGTAGTCCTGTTTGGGATGATTTGGACACTTCCAACAATAGTTTCCTTTTGCAACCTCAGGTTCCTTTTGGTCTCAACAACTCAAATCAGCACCAACAACAAGAACAAGATGGATTCAATGATAATCATGATGCTGCTGATGTTCATATACAACAAGATTGA 1242 0.442 MDEANNNNKNSNSGSRFRNMGVDDDSDAHKVFDEMNDPTFFQRAQWKPVFDEASVLHNRPLKKIRSPQRSSSLQQPLPSPSSSSSSSVPPSSQSSRIVFPFAFDPSQQNPMQMQFPYQYGTRTDTPFMHPPMQPTTHNNQMISFGSQSHHPQQQHNMNMVNTVYQPQMLQQQNQQQILQYWSEALNLSPRGRMMMMNNRLRPPSQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKKDDDNNDKNQEEAPSDAPTTSSPSSSITTTKQVEEVSEGGNANVEKSPIEEGNENSRSVSEGVSQELVWGEMSAWFNAIPSGWGPGSPVWDDLDTSNNSFLLQPQVPFGLNNSNQHQQQEQDGFNDNHDAADVHIQQD* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1234 413 MobiDBLite consensus disorder prediction 65 94 - -
Amo08g1234 413 Pfam AP2 domain 213 261 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 PRINTS Ethylene responsive element binding protein signature 213 224 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 PRINTS Ethylene responsive element binding protein signature 235 251 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 ProSiteProfiles AP2/ERF domain profile. 212 269 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 MobiDBLite consensus disorder prediction 364 413 - -
Amo08g1234 413 MobiDBLite consensus disorder prediction 397 413 - -
Amo08g1234 413 CDD AP2 211 271 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 SUPERFAMILY DNA-binding domain 212 270 IPR016177 GO:0003677
Amo08g1234 413 MobiDBLite consensus disorder prediction 1 19 - -
Amo08g1234 413 MobiDBLite consensus disorder prediction 1 31 - -
Amo08g1234 413 MobiDBLite consensus disorder prediction 273 337 - -
Amo08g1234 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 394 - -
Amo08g1234 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 4 394 - -
Amo08g1234 413 MobiDBLite consensus disorder prediction 287 312 - -
Amo08g1234 413 SMART rav1_2 212 275 IPR001471 GO:0003700|GO:0006355
Amo08g1234 413 MobiDBLite consensus disorder prediction 58 94 - -
Amo08g1234 413 MobiDBLite consensus disorder prediction 366 396 - -
Amo08g1234 413 Gene3D AP2/ERF domain 212 270 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1234 Amo-Chr8 20206470 20208817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1234 12 367 AP2-EREBP Transcription Factor Family AT2G20880 43.164 8.57e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g1234 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1234 - - gmx:100101898 351.288