Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1227 ATGTGTGGTTGGTTGTGTATGTTGTATTCCAAAAATGGGTACTGGCAGGTTAGTGTTCCATGTAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCTCTTCAAACATTGCCTCCTCAAGACCCTCACCATCATCAGAAGCAGCACCTGAGCTTCCAAGATCCAAGCAGCAAGGAACTGGGATCATCCTCATCAAGATGCAACAAGTTATCAGCAGCATTTGATCCTGTAGACCATGATCCCCAACCTAGGATCCCTCCCATTCGTCCTCCGGAAAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGAATTAAGGCTAGCAATCCAGACATAAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAAT 432 0.4583 MCGWLCMLYSKNGYWQVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTLPPQDPHHHQKQHLSFQDPSSKELGSSSSRCNKLSAAFDPVDHDPQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1227 144 MobiDBLite consensus disorder prediction 66 83 - -
Amo08g1227 144 PANTHER AXIAL REGULATOR YABBY 2-RELATED 11 144 - -
Amo08g1227 144 CDD HMG-box 109 136 - -
Amo08g1227 144 Gene3D High mobility group box domain 96 144 IPR036910 -
Amo08g1227 144 MobiDBLite consensus disorder prediction 46 112 - -
Amo08g1227 144 Pfam YABBY protein 16 144 IPR006780 GO:0007275
Amo08g1227 144 PANTHER PROTEIN YABBY 6-RELATED 11 144 IPR006780 GO:0007275
Amo08g1227 144 SUPERFAMILY HMG-box 100 142 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1227 Amo-Chr8 20116629 20119548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1227 17 144 C2C2-YABBY Transcription Factor Family AT1G08465 63.636 9.82e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo08g1227 YABBY 3.1e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1227 K25796 - gmx:100785458 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0758 18 10677840 10685829 Amo08g1227 08 20116629 20119548 hybridization
Amo08g1227 08 20116629 20119548 Amo13g1759 13 25182679 25192924 PCT
Amo13g1759 13 25182679 25192924 Amo08g1227 08 20116629 20119548 PCT