Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1223 ATGGAGGGATCCCCTGGGATTGAAGATAGCAGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGCATCTGTCTTGAAGCCTTCTGTGACAGTGATCCTTCCACCGTGACAAGTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACTTTAGGTTAAATCCACCTAGAAATGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAGGAGCATATAATCCAACACTTGGCTGCTGCTGCTGCAATGGGCCGAGCACGTCACATTGCAAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCTCCTCCTGTCGCTCCTGCTTCTTCCTCTCCTACTCACAGCCAGAGGGGGGATGGTGAACAAACACCTGCAGTTGCTTTTGCCACTCTTTCTCCAGCTCCTGCAACTGGAGAAGAATCACCACAGCTTACTTCAGTTCCTCCTGTTCTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGTCTGCTGTACACACCATTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAAGTAGTCAGGATAGAGCGGGGCCATCGGAATTACAGTCCTTTTCAGAATCCCTGAAATCTAAATTAAATGCTGTGTCGTCAAGATACAAGGAGTCAATTTCGAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACTTCTATGTCTGATATTGGATCTGAAGTCAGACGAGAAGTTAATGCTGGGATTGCAACTGTGTCACGAATGATGGAACGCCTGGAAACCAGAGACAGTAACAGAAGTAATAGCAATACCAATAGCAATACTGCACCAAGTAATTTGGAGCATGGTTCAGGTCAGGGATCAAGTGATCCGCATTTAACAGAACCTGAAGGGAGTCAACTGAGAGACACCAACACAAAAACATCTTGTGCTGCAGGTTCTAGTTCTAGTTAA 1191 0.4685 MEGSPGIEDSSKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHFQCILEWCQRSSQCPMCWQPISLKDPSSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDADLEEHIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVWSTHPNSPPVAPASSSPTHSQRGDGEQTPAVAFATLSPAPATGEESPQLTSVPPVLAEQVSASGSGSAVHTIDHQGSSNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNTSMSDIGSEVRREVNAGIATVSRMMERLETRDSNRSNSNTNSNTAPSNLEHGSGQGSSDPHLTEPEGSQLRDTNTKTSCAAGSSSS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1223 396 MobiDBLite consensus disorder prediction 344 396 - -
Amo08g1223 396 MobiDBLite consensus disorder prediction 171 199 - -
Amo08g1223 396 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Amo08g1223 396 MobiDBLite consensus disorder prediction 232 318 - -
Amo08g1223 396 MobiDBLite consensus disorder prediction 331 396 - -
Amo08g1223 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 85 IPR013083 -
Amo08g1223 396 SUPERFAMILY RING/U-box 29 83 - -
Amo08g1223 396 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 395 - -
Amo08g1223 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 395 - -
Amo08g1223 396 MobiDBLite consensus disorder prediction 232 295 - -
Amo08g1223 396 SMART ring_2 36 76 IPR001841 -
Amo08g1223 396 MobiDBLite consensus disorder prediction 180 198 - -
Amo08g1223 396 Pfam Ring finger domain 35 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1223 Amo-Chr8 20070394 20074299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1223 33 84 C3H Transcription Factor Family AT4G00335 42.308 1.88e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1223 K19043 - gmx:100814908 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0761 18 10723084 10726159 Amo08g1223 08 20070394 20074299 hybridization