Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1210 ATGGATAACACCACTCTCACCACCACCACCACCGCCACCGCCACCAATTCACTTAAGCCCTTCCAAGTCAACCTCACCTGCTCCCTCCACCACCATGACAAGAGACCTCTCATTGATGAACACGACTTCTTCTCTGCCTCTGCCTCTGCCCCTCCTCCTCATCACCACCACCACAACACCATGAATTCTGATATCTTGGATTCCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAACACGAGCAGCGATCAATCCGTTGTTGACGATGACATCTCACCGAATTCACACCAGAAAAGACCCGTCCCTGATCAGACGGTTGTTATTCTGGCGGAGCTGGAGCGAACGAAGGCGGAGAATCAACGGTTGAGAGAGAGGCTTGATCGTGTAACCGCGGAATACAAGGCCCTGCAGATGCAAGTGGTGGCTTTGATGCAACAACACAAGCCAGAGGAGGAGGAGGAGAAGAAGCAAGACGCAGCGCCAAGACAGTTCATGGATCTTGGATTGGCCACTAACGGTGCTGAGACGGGGGAGGAGGCTTCGCTTTCTTCGTCGGAGAGGTCGAAGTCTCCAGAGAGGAAGAATGGAAGCAGTGATGATCAAGAAAAGAATAGCAGAGAGGATAGTCCCTTGGCTCCAAGAAATGTTGATCAAGCTGAAGCCACTATGAGAAAAGCTAGAGTCTCTGTTAGAGCTAGATCAGAGGCTCCAATGATGACGGATGGATGCCAATGGAGGAAATATGGGCAGAAGATGGCAAAAGGAAACCCATGTCCAAGAGCATACTACAGATGCACCATGGCTGCAGGTTGCCCTGTTAGAAAACAGGTACAAAGGTGTGCTGAGGACAGAACAATACTAGTAACAACATATGAAGGGAATCACAACCACCCTCTGCCACCAGCAGCAATGGCAATGGCACAAACAACATCTTCAGCAGCAAGAATGCTTCTCTCGGGATCAATGTCAAGCAGTGATGGCCTTATGAATGCTAACTTTCTAACAAGGACACTCCTTCCTTGCTCCTCAAGCATGGCCACAATCTCAGCCTCAGCACCATTCCCAACTGTCACTTTGGATCTCACTCACTCCCCTAACCCTTTGCAATTCCCAAACCACCAAAACCACTTCCAATTACCATTCCCTCACTCACCCCCTTCTTCATTGCTGCCTCACATCTTTGGCCACGCTCTTTATAACCACTCTAAGTTCTCAGGCCTTCAACTCTCTCAGGATGCTGATCCTTCTTCTCAGCCTCCCCCGCCGCCTCCGCAGCTCGCCGATTCAGTTAGTGCTGCCACTGCTGCCATTGCAGCTGATCCTAACTTCACTGCTGCTTTGGCAGCTGCTATTACTTCCATTATTGGAGGTGCACAACACCAAAACAATAATGGCAACACCAACAATAGCACTGTTGTTAATAATGGCAACAACACTAGTACTCCCAACAACAATACCAATGGAAGCAATAATAATATCAACAGTTCCAATTTCTCATCAGAGAACTAG 1512 0.4881 MDNTTLTTTTTATATNSLKPFQVNLTCSLHHHDKRPLIDEHDFFSASASAPPPHHHHHNTMNSDILDSKVNTGLNLLTTNTSSDQSVVDDDISPNSHQKRPVPDQTVVILAELERTKAENQRLRERLDRVTAEYKALQMQVVALMQQHKPEEEEEKKQDAAPRQFMDLGLATNGAETGEEASLSSSERSKSPERKNGSSDDQEKNSREDSPLAPRNVDQAEATMRKARVSVRARSEAPMMTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILVTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSSDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPNHQNHFQLPFPHSPPSSLLPHIFGHALYNHSKFSGLQLSQDADPSSQPPPPPPQLADSVSAATAAIAADPNFTAALAAAITSIIGGAQHQNNNGNTNNSTVVNNGNNTSTPNNNTNGSNNNINSSNFSSEN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1210 503 MobiDBLite consensus disorder prediction 76 102 - -
Amo08g1210 503 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g1210 503 MobiDBLite consensus disorder prediction 409 429 - -
Amo08g1210 503 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo08g1210 503 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g1210 503 Coils Coil 110 147 - -
Amo08g1210 503 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 481 IPR044810 GO:0003700
Amo08g1210 503 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo08g1210 503 MobiDBLite consensus disorder prediction 186 211 - -
Amo08g1210 503 MobiDBLite consensus disorder prediction 463 503 - -
Amo08g1210 503 Pfam WRKY DNA -binding domain 242 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo08g1210 503 PANTHER OS05G0567200 PROTEIN 26 481 - -
Amo08g1210 503 MobiDBLite consensus disorder prediction 175 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1210 Amo-Chr8 19931308 19933595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1210 35 470 WRKY Transcription Factor Family AT1G62300 52.183 3.53e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo08g1210 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1210 - - aip:107613963 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1210 08 19931308 19933595 Amo13g1778 13 25455330 25459166 PCT
Amo13g1778 13 25455330 25459166 Amo08g1210 08 19931308 19933595 PCT