Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1184 ATGAAGTCGTTTGTTGTTTCCCACCTTGTGATTTGGACCATCTTTTGTGGTGGTATTTTCTGCAGTAGGCCTGCAAGTGTGAACATTGGTGCAGTCTTCACCTTCGATTCGGTCATAGGTAGAGCTGCAAAGGTGGCCATGAAAATGGCCGTTGATGATGTCAATGCTGACCCTAGAGTCCTCAATGGCACCCACCTCAACTTGATAATGAAGGATGCTGCCTGCAGTGTCTTTCTGGGAGCTATTGGAGCTTTTCAGGCACTCGAGGAAGGGATTGTAGCAATGGTTGGTCCACAGTCGTCTTCTATAGCTCATATGGTATCTCAAATTGCTGATGCTCTCCATGTGCCTCTTGTCTCATATGGTGCCACTGATCCTACCCTGTCCTCCCTTCAGTTCCCTTACTTTTTTCGTACTATACAAAGCGACTTGGAGCAGATGATTGCGGTAGCTGATCTAATTGAATTCAATGAATGGAAGGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGAATGTCGGCTTTGAGGGATGAACTTGAAAATAGGAGATTGAAAATTGCTCATAAGCTACCTTTGAGTATTCAGTTTGATCCAAATGAAATCACCACTTTGCTGAACCAATCCAAATTGTTTGGTCCTCGTGTGTATGTTGTTCATATCAACCTGGATCCAAAACTGAGATTTTTCAATATTGCCAACAAACTTAAAATGATGACCAAAGACTATGTTTGGCTAGTCACTGATTGGCTCTTTGCTACCTTAGATTCTTTCTCCACAGTGAATCAGACCTCTCTCAGTGTTCTCCAAGGGGTTGTTGGTTTTCGTCAGCATATTCCAGATTCCCGAAAGAAGAGAGGTTTCGTTTCAAAATGGAGAAATGCACATAAAGGTATGCCAAATGGTAGTTTGAATGCCTATGGATACTATGCTTATGATACAATATGGGCAGTTGCGCGATCAATTGACAGATTCATTAGATTGCATAATAATATTACCTTTGTAGTTAATCACGAGAATAAGCCATCTCACACACAAGGAAATGATCTTCAGCTTGACAAGCTCAAAATCCTTGCTAGTGGATCTGATCTGGGCAGTATATTATTACAGTCAAATTTTACTGGTGTGAGTGGTCGAGTTCAGTTTAATTCAAACAGGAATATCATAAGTGGTGGTTATGATGTTATAAATATCAATCAGAGTGCAATGACTACGGTTGGTTATTGGTCTAATTGCTCAGGCTTTTCAGTCATCCCCGCTGAAAATCTTAAGACTAAGAAATGTAAAAGGTTAACTCAAGATCATAAGCTTGGCAATATTACTTGGCCTGGTGGAGGGACAGAAAGACCCCGCGGCTGGGTGATTGCTGATAATGGAAGACCACTGAGAATTGGAGTACCACGTAGAGCAAGTTTTGTTGAATTTGTGACTGTGAAGGATCATCAAATTCTGGGGTACTGCATTGATGTCTTCAACAAGACCCTGGAATTTATTCCATATGATGTTCCTTACCGTTTCATCCCTGTTGGGAATGGTAAATCAAATCCAAGCTATGATGAACTCGTGAAAAATGTTGCTGACAGTGTATATGATGCAGTTGTCGGCGACATTGCAATTGTGACGAACCGTACACAATATGTGGATTTTTCTCAGCCTTATGCAACAACTGGCCTTGTTATAGTGGCTCCTGTCGACAATGCAAGATCAAATGCTTGGGTGTTTCTCCAACCATTCACAGCAGATATGTGGTGTGCTACGGCTGCTTCATTCGTGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATGATGACTTCCGTGGTCCTCCTAAGAGACAACTGGTGACAGCGTTTATGTTCAGCCTCTCAACACTGTTCAAGACAAACCAGGAACGGACGATAAGCTCGCTATCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACTGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTCTCATCGCCCATCACAGGAATCGATAGCTTGATTGCGAGCAATTGGCCCATAGGATACCAAGTAGGATCTTTTGCTTACAGCTATCTTACGGATAGTCTTTATATATCAAAATCAAGACTTGTTCAGCTAGGCTCTCCGGAGGAATATGCTAAAGCTCTGAAGAAGGGGCCGTCTAATGGAGGGGTGGCGGCTATCATCGATGAGCTTCCTTACGTGGAGTTATTTCTGTCAAAAGAAACCGGGTTTGGTATCATTGGACAGCCATTTACCAAAAGCAGTTGGGGATTTGCTTTCCAAAAAGAGTCTCCTCTCGCCCTCGACATGTCCACGGCTATTCTAAAACTCGCCGAGAGCGGAGAGCTCCAGAAGATACATGACAAGTGGCTCTGTAAGATGGGTTGCTCTGAAAAAACAACAAGCAACTCCAAGCCTGACCAACTTCACTTGATTAGTTTTTGGGGTCTGTATCTGTCATGTGGTGTTGTCACTCTCGCCTCGCTTTTGGTGTTTCTTCTGCGAGCGATTCGCCAATACGCTCGCTTCAAACGACGGGAAAAGGACATTGCTGTCGCCTCATCGTCGGAACCATCAAAGACCAGCAGCCATTGTTCCCAGGTTCTCCTTAACTTCTTCAACTTCATTGATGAAAAAGAAGAGGCCATAAAGAAAATATTCACTCAATGTGACAATCCTGAACCTCAAGTTCTCTCAAAAATGGAGGTGCACTTATTTACAAGGCATGGCAGCATGGTGATGGTGTTGTTCCTCTTTGTTTTCTGCTTCTGGATTCCAGTAGAAGTGGTGGGGAGGACAGGAGCTACCATTGGAAACGCTACCGTTTCTTCTTCGAGTCCAAGAGTTTTGAAAATTGGGGTGCTGTTTACTTTGAATTCTGTCATTGGAAGATCTGCTAAAGCTGGTGTATTGGCTGCTATTGATGATGTTAATGCTAACAAAAGCATCCTTCGTTCGACTAAACTTGAAATTATGTTGCATGATACAAATTGCAGCGGGTTTCTTGGAACCGTGGAAGCTCTGCAGTTGATGGAGAATGAAGTGGTTGCTGCAATTGGTCCACAATCATCTGGAATAGCTCATGTCATCTCTCATGTGGCTAATGAACTCCATGTGCCTCTTCTTTCATTCGCGACAGACCCTGCTCTAGTGTCACTCCAGTATCCATATTTCATCCGCACCACACCAGATGACTATTTCCAGATGTATGCAATTGCAGACTTGGTTGATCACTATAGGTGGAGGGAGGTAATAGCTATCTTTGTAGATGATGACAATGGAAGAAATGGAATTTCAGTGTTGGGCGATGCGCTTGCTAAGAAACGTGCCAAGATATCTTACAAGGCTGCATTCCCTCCTGGAGCCCCCATGAGTAATATCAGTGACTTGTTGAATCAGGTGAACCTGATGGAATCACGTGTTTATGTGCTGCATGTTAATCCTGATTCTGGCTTGTCAATTTTTGCACTTGCCAAGAAGATTGGGATGATGACTAGTGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCTGTGCTGGATTCTATGGAGCAGGTTAACACTGACACCCTTAATATACTACAAGGAGTTGTTGCTCTGCGGCATCACACGCCTGACACTGATCTTAAGAAGAGTTTCATCTCAAATCTGAAGAGCAGAAAGAACAATGAGACTGCAGGCTTCAATTCTTATGCATTCTATGCATATGATTCTGTTTGGTTAGCGGCGCGTGCTCTGGATACTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCTCGGATCCTAAGTTGCAAGACACAAATTCAAGCATGTTGCATTTTTCAGCACTCCGTGTGTTTGATGGCGGTGATAAGTTTCTTCAGACAATTCTGGAAACAAACTTCACTGGTGTGAGTGGCCCAGTTCAGTTTGGTATGGATAAGAATTTGATTCATCCAGCTTATGATATCATGAATATCGGCGGGTTTGGAACTCGTAGGATTGGTTATTGGTCTAATTATTCTGGTCTCTCAGTAACAGCTCCTGAAATTTTGTATCTGAAACCACCTAACGCTTCGGCAAGCAACCAACACCTATATAGTGTTATATGGCCTGGAGAAACAACAGTTACACCAAGGGGATGGGTATTCCCAAACAATGGGAAACCATTGAGAATCGCAGTGCCTAATCGAGTAAGCTATTTGGAGTTTGTTGGTAAGGACAAGAACCCTCCTGGGGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAAGTTGTTGCCTTATCCTGTCCCAACAGAATATATATTATATGGTCATGGTGATAGAAATCCCAGCTATGATGACCTTGCATATCAGGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATATTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAGCCTTACATGGAATCAGGGCTGGTGGTTGTTGTTCCTGTTAAGGAAATCAAGTCAAGCCCTTGGTCCTTTCTAAAGCCATTCACCACTAAAATGTGGTTAGTTACCGGTGCATTCTTTCTCTTCGTGGGAGCCGTCGTGTGGATTCTCGAGCACCGGCACAATGAAGAATTCCGCGGAGAGAACACTGTGAGTGCACTCGGTCGATTGGTTCTACTCATATGGCTTTGGGTGGTTTTAATCATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATCCAAGAAGGATCTTTTGCGAAAAAGTATCTGACAGATGAACTCAACATAGCACCATCTAGGATAGTTACACTGAAAAATATGGAGGCATATGTTGATGCCCTTGAACGCGGACCAAGGAATGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACAGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAAAGGGATTCACCGCTTGCTGTTGATTTGTCAACTGCCATCCTTCAACTTTCGGAGAACGGGGAACTGCAAAAGATCCATGACAAATGGCTTTTGAAGCGAGACTGCACTGCGCAACTCAATGTTGAAGACTCAAATAAACTGTCTCTGAGTAGCTTCTGGGGCCTCTTTCTCATATGTGGCATTGCATGCTTCCTTTCTTTGGTTGTATTCTTTGTTAGAGTGTTCTGTCAATACACCAGATTTAGCCCTGATCCTGAACAAGTTGATGTGGAAATTCAACCAAGGCCTCCTAGAAGGAACCTCAAAAGTACTAGTTTCAAGGACTTGATGGAATTTGTGGATACCAAAGAAAAAGAAATCAAAGAGAGACTTAGGAATAGTAAAAGGAGAAGAAGCCAGAGTCTAGATGAGCAATCTAGTTCATCACCCTCCTAA 5490 0.4295 MKSFVVSHLVIWTIFCGGIFCSRPASVNIGAVFTFDSVIGRAAKVAMKMAVDDVNADPRVLNGTHLNLIMKDAACSVFLGAIGAFQALEEGIVAMVGPQSSSIAHMVSQIADALHVPLVSYGATDPTLSSLQFPYFFRTIQSDLEQMIAVADLIEFNEWKEVIAVYLDDDYGRNGMSALRDELENRRLKIAHKLPLSIQFDPNEITTLLNQSKLFGPRVYVVHINLDPKLRFFNIANKLKMMTKDYVWLVTDWLFATLDSFSTVNQTSLSVLQGVVGFRQHIPDSRKKRGFVSKWRNAHKGMPNGSLNAYGYYAYDTIWAVARSIDRFIRLHNNITFVVNHENKPSHTQGNDLQLDKLKILASGSDLGSILLQSNFTGVSGRVQFNSNRNIISGGYDVININQSAMTTVGYWSNCSGFSVIPAENLKTKKCKRLTQDHKLGNITWPGGGTERPRGWVIADNGRPLRIGVPRRASFVEFVTVKDHQILGYCIDVFNKTLEFIPYDVPYRFIPVGNGKSNPSYDELVKNVADSVYDAVVGDIAIVTNRTQYVDFSQPYATTGLVIVAPVDNARSNAWVFLQPFTADMWCATAASFVMIGVVIWILEHRVNDDFRGPPKRQLVTAFMFSLSTLFKTNQERTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDSLYISKSRLVQLGSPEEYAKALKKGPSNGGVAAIIDELPYVELFLSKETGFGIIGQPFTKSSWGFAFQKESPLALDMSTAILKLAESGELQKIHDKWLCKMGCSEKTTSNSKPDQLHLISFWGLYLSCGVVTLASLLVFLLRAIRQYARFKRREKDIAVASSSEPSKTSSHCSQVLLNFFNFIDEKEEAIKKIFTQCDNPEPQVLSKMEVHLFTRHGSMVMVLFLFVFCFWIPVEVVGRTGATIGNATVSSSSPRVLKIGVLFTLNSVIGRSAKAGVLAAIDDVNANKSILRSTKLEIMLHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHVISHVANELHVPLLSFATDPALVSLQYPYFIRTTPDDYFQMYAIADLVDHYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAPMSNISDLLNQVNLMESRVYVLHVNPDSGLSIFALAKKIGMMTSGYVWIATDWLPSVLDSMEQVNTDTLNILQGVVALRHHTPDTDLKKSFISNLKSRKNNETAGFNSYAFYAYDSVWLAARALDTFLNEGGNISFSSDPKLQDTNSSMLHFSALRVFDGGDKFLQTILETNFTGVSGPVQFGMDKNLIHPAYDIMNIGGFGTRRIGYWSNYSGLSVTAPEILYLKPPNASASNQHLYSVIWPGETTVTPRGWVFPNNGKPLRIAVPNRVSYLEFVGKDKNPPGVKGYCIDVFEAAIKLLPYPVPTEYILYGHGDRNPSYDDLAYQVAQNNFDAVVGDITIVTNRTRIVDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTTKMWLVTGAFFLFVGAVVWILEHRHNEEFRGENTVSALGRLVLLIWLWVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFAKKYLTDELNIAPSRIVTLKNMEAYVDALERGPRNGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKIHDKWLLKRDCTAQLNVEDSNKLSLSSFWGLFLICGIACFLSLVVFFVRVFCQYTRFSPDPEQVDVEIQPRPPRRNLKSTSFKDLMEFVDTKEKEIKERLRNSKRRRSQSLDEQSSSSPS* 1830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1184 1829 CDD GluR_Plant 463 803 - -
Amo08g1184 1829 SUPERFAMILY Periplasmic binding protein-like I 21 457 IPR028082 -
Amo08g1184 1829 Gene3D - 1610 1718 - -
Amo08g1184 1829 Gene3D - 984 1324 - -
Amo08g1184 1829 Pfam Bacterial extracellular solute-binding proteins, family 3 1417 1716 IPR001638 -
Amo08g1184 1829 Gene3D - 142 417 - -
Amo08g1184 1829 PANTHER GLUTAMATE RECEPTOR 3.7 950 1818 - -
Amo08g1184 1829 Gene3D - 458 574 - -
Amo08g1184 1829 Pfam Ligand-gated ion channel 1717 1748 IPR001320 GO:0015276|GO:0016020
Amo08g1184 1829 Gene3D - 45 393 - -
Amo08g1184 1829 CDD GluR_Plant 1394 1715 - -
Amo08g1184 1829 Pfam Receptor family ligand binding region 980 1332 IPR001828 -
Amo08g1184 1829 Pfam Receptor family ligand binding region 44 403 IPR001828 -
Amo08g1184 1829 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 909 - -
Amo08g1184 1829 Gene3D - 1508 1549 - -
Amo08g1184 1829 Gene3D - 575 705 - -
Amo08g1184 1829 Gene3D - 1550 1609 - -
Amo08g1184 1829 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 950 1818 - -
Amo08g1184 1829 Pfam Bacterial extracellular solute-binding proteins, family 3 483 803 IPR001638 -
Amo08g1184 1829 SUPERFAMILY Periplasmic binding protein-like II 1371 1716 - -
Amo08g1184 1829 PANTHER GLUTAMATE RECEPTOR 3.7 13 909 - -
Amo08g1184 1829 Pfam Ligand-gated ion channel 804 835 IPR001320 GO:0015276|GO:0016020
Amo08g1184 1829 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Amo08g1184 1829 Gene3D - 1076 1349 - -
Amo08g1184 1829 CDD PBP1_GABAb_receptor_plant 963 1353 IPR044440 -
Amo08g1184 1829 Gene3D - 758 810 - -
Amo08g1184 1829 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 314 326 - -
Amo08g1184 1829 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Amo08g1184 1829 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Amo08g1184 1829 Gene3D - 1391 1507 - -
Amo08g1184 1829 MobiDBLite consensus disorder prediction 1808 1829 - -
Amo08g1184 1829 SMART GluR_14 466 805 IPR001320 GO:0015276|GO:0016020
Amo08g1184 1829 SMART GluR_14 1397 1717 IPR001320 GO:0015276|GO:0016020
Amo08g1184 1829 SUPERFAMILY Periplasmic binding protein-like I 956 1388 IPR028082 -
Amo08g1184 1829 SUPERFAMILY Periplasmic binding protein-like II 443 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1184 Amo-Chr8 19523695 19539815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1184 23 770 Ion Channels AT1G05200 50.663 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1184 K05387 - gmx:100796389 1366.29