Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1180 ATGCCAGCCGGTATTATGATTCCGGCGAGAAACATGATGTCATCGATGATCGGAAGGACCAACAATGGAAACAGCCTTGGGGGTGGGTTTGGATCTTCGTCTTCCTCTGGACTCTCTCTTGGCCAGATTGAGAACCACAACAAGGGTTCAGAGACACATCACCAAAGATCCATGGATATGTTTCAAGCCAACATGATGGAAGGTGGTCAATTGCACCACCACGGCCTCGAGATGGGTCAGAACACGCCGGAGAGCGACGTTCCTAGAATCCGAGAGGACGAGTTCGACAGCGCCACCAAGTCCGGCAGCGAGAACCAAGAAGGTGGCGCCTCCGGCGAGGACCAAGACCCCCGCCCTAACAAGAAGAAGCGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCCGTGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTTTGGTTCCAGAACAAGCGCACTCAAATGAAGACGCAACATGAGAGGCACGAGAACACGCAGTTAAGGACAGAGAACGAGAAGCTGAGAGCGGATAACATGAGGTATAGGGAGGCTCTTAGCAATGCCTCTTGCCCCAACTGTGGTGGACCAACCGCCATTGGAGAAATGTCTTTTGATGAGCATCACTTGAGGCTTGAAAATGCCAGGCTAAGGGAAGAGATTGATCGGATTTCTGCCATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTACCCACTCCTTTCATCATCCTCAGTTCCAGCACGTCCGTTAGAACTCGGCATTGGTGGTTTCGGTGGGCAAGCGGGCATGGGTGGCGGCGACATGTACGGAGGAGGTGGAGCCGGAGATCTTCTGAGGCCAATAAGTGGGCCCACTGAAGCAGACAAGCCAATGATAATAGAGCTGGCCGTAGCGGCCATGGAGGAGCTGATTGGGATGGCACAGATGGGTGAGCCTCTTTGGTTGACCACACTTGATGGTGCCACCACTGTGCTTAACGAGGATGAATATGTCAGATCTTTCCCCCGTGGAATCGGACCCAAACCTAATGGATTCAAATGTGAGGCTTCACGAGAAACCGCTGTTGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCGACGGTTTTCTCTGGAATAGTTTCAAGAGCGGTGACTCTAGAAGTTCTATCAACAGGGGTAGCAGGAAACTATAACGGTGCCTTGCAAGTGATGACGGCGGAGTTACAAGTGCCTTCGCCGCTGGTGCCAACAAGAGAGAGCTATTTCGTAAGGTATTGTAAGCAGCACGCGGACGGCACGTGGGCAGTGGTGGACGTGTCGTTGGACAATTTGCGGCCTAGTCCTTCGGCCAGGTGCAGGAGAAGGCCTTCTGGTTGCTTGATTCAAGAAATGCCCAACGGCTATTCCAAGGTCATATGGGTTGAGCACGTTGAAGTTGATGACAGAGGCGTTCATAGTCTCTATAAGCAGCTTGTTAGCTCTGGTCACGCCTTCGGTGCCAAACGCTGGATTGCAACCTTGGATCGCCAGTGTGAAAGGCTCGCTAGTGCCATGGCAACTAACATTCCCACCGTTGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGCATGCTGAAACTGGCGGAGAGAATGGTGATAAGCTTTTGTGCTGGGGTGAGTGCTTCAACGGCGCACACGTGGACAACGCTTTCTGGAACGGGTGCGGATGACGTCAGAGTCATGACACGTAAGAGTGTGGATGACCCTGGAAGGCCACCTGGCATTGTTCTCAGTGCTGCTACTTCTTTCTGGCTCCCAGTACCTCCTAAAAGGGTCTTTGAATTCCTCCGTGACGAGAATTCCAGAAGCGAGTGGGACATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTCTCTCTCCTTCGAGTCAATAGTGCGAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCACGGATTCAACTGGGTCATTTGTGATCTATGCCCCAGTGGACATTGTTGCCATGAATGTGGTTCTGAATGGAGGAGATCCTGACTATGTGGCGCTTCTTCCTTCTGGCTTCGCTATTCTTCCGGACGGGACAACGCCCGACGGAGGTAGCGAAGCCGGTGGACATGGTGGTTCTCTCTTAACCGTTGCGTTTCAAATACTGGTTGATTCCGTTCCAACCGCCAAGCTGTCTCTTGGTTCTGTTGCCACTGTTAACAACCTTATTGCTTGCACTGTTGAGAGAATTAAGGCTTCTTTATCTGGAGAAGCTCCTTCATAA 2388 0.5096 MPAGIMIPARNMMSSMIGRTNNGNSLGGGFGSSSSSGLSLGQIENHNKGSETHHQRSMDMFQANMMEGGQLHHHGLEMGQNTPESDVPRIREDEFDSATKSGSENQEGGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSSSVPARPLELGIGGFGGQAGMGGGDMYGGGGAGDLLRPISGPTEADKPMIIELAVAAMEELIGMAQMGEPLWLTTLDGATTVLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAVTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTPDGGSEAGGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEAPS* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1180 795 MobiDBLite consensus disorder prediction 95 130 - -
Amo08g1180 795 SMART START_1 316 536 IPR002913 GO:0008289
Amo08g1180 795 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 75 791 - -
Amo08g1180 795 SUPERFAMILY Bet v1-like 555 786 - -
Amo08g1180 795 CDD homeodomain 122 180 IPR001356 GO:0003677
Amo08g1180 795 CDD START_ArGLABRA2_like 311 535 - -
Amo08g1180 795 Gene3D - 361 533 IPR023393 -
Amo08g1180 795 SUPERFAMILY Bet v1-like 307 538 - -
Amo08g1180 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 75 791 IPR042160 -
Amo08g1180 795 Gene3D - 109 196 - -
Amo08g1180 795 Pfam START domain 317 536 IPR002913 GO:0008289
Amo08g1180 795 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Amo08g1180 795 SMART HOX_1 120 183 IPR001356 GO:0003677
Amo08g1180 795 MobiDBLite consensus disorder prediction 18 46 - -
Amo08g1180 795 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Amo08g1180 795 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Amo08g1180 795 Coils Coil 185 205 - -
Amo08g1180 795 ProSiteProfiles START domain profile. 307 539 IPR002913 GO:0008289
Amo08g1180 795 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Amo08g1180 795 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1180 Amo-Chr8 19493906 19497974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1180 60 792 Homeobox Transcription Factor Family AT1G05230 79.161 0.0 1175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo08g1180 START 3.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1180 K09338 - gmx:100809556 1358.97