Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1176 ATGGACGACATAGATCACTCTTCTTCTTCTTCTTCTCAACATGTTTCTGCAAACTCTACAGAACAAGTGTCCAATCGAGCTTCCAAGGTTGAATTTTCGGAGGATGAGAAAACTCTTATTTCCAGGATGTATAAACTTGTTGGGGACAGGTGGTCCTTAATTGCCGGAAGAATTCCCGGAAGAACAGCTGATGAAATAGAGAAGTATTGGACTTCAAGATACTCATCAAGAAACGAATGA 240 0.4042 MDDIDHSSSSSSQHVSANSTEQVSNRASKVEFSEDEKTLISRMYKLVGDRWSLIAGRIPGRTADEIEKYWTSRYSSRNE* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1176 79 ProSiteProfiles Myb-like domain profile. 24 74 IPR001005 -
Amo08g1176 79 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 8 76 - -
Amo08g1176 79 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Amo08g1176 79 SUPERFAMILY Homeodomain-like 30 74 IPR009057 -
Amo08g1176 79 SMART sant 28 76 IPR001005 -
Amo08g1176 79 MobiDBLite consensus disorder prediction 1 32 - -
Amo08g1176 79 CDD SANT 31 70 IPR001005 -
Amo08g1176 79 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 8 76 - -
Amo08g1176 79 MobiDBLite consensus disorder prediction 8 27 - -
Amo08g1176 79 Pfam Myb-like DNA-binding domain 29 71 IPR001005 -
Amo08g1176 79 Gene3D - 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1176 Amo-Chr8 19407481 19408821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1176 23 77 MYB Transcription Factor Family AT5G14750 43.636 2.07e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g1176 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1176 - - gmx:100801532 103.605