Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1172 ATGGAGGAACCCATTTGTCCAATCGATTCCAGTTGCCAAACTCAAATCTCTGCTCTTCTCTCTCCTCCCTCCACTCTTCAACTTCAGGAATACTATAATACCCTTTTGTCTGCAAGGCACTGCAGTTCTATCACTGTCAAACAAGATGCTAACTTTGGCAAAGGGGTATTTGCTGCCATGGACTTCTCTGATGGGGACCTTGTTCTCAGGGACCAAATGCTTGTGGGGTCTCAACACTCTTTCAACAAGATTGATTGTTTTGTATGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAGCTTCAAATTGGAAGGAGGCTTTACCTCCAGGGATTAAGGGATTCTGAGAGTCATGGATGTGATGTCGGAAGCTCTTCGAGCTTGTCGAAAAACTTCCATGAGATGGATTCATCATCTGAAGATGAGGATCAGGGAACTCATCAATGTGGTTCCGGCAGTTCCAAAGATAAAATTCCTCTTCCTGAAGGTGTTGTGGAATCTTTAATGAATGGCCAACTGAATTTGCCTTTCTCTAAGGAGTTCTCGTTGCCGCCGGTGGTTCCATGCCTTGGCGGCTGTGGAGAAGCTTACTATTGCAGCACATCATGTGCAGAGGCTGACTGGGAATCTTCACATTCTTTACTCTGCACTGGCGAGAGGTCTGATCCCGCTCATAGGGAGGCACTTCTTAAATTCAATAAACATGCTAATGAAACAAATGATATATTCATCCTTGCCGCAAAGGCTATTTGTTTTACCATATTAAGATACCGCAAGTTAAAAGCAAACTGTCATGAAGGGAAAATGAAATATGATACTTCTGGTGATTCAAACAGCTATAATGCCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGATTGTGTTGCATTGCCAGATGATATTGATTCTTCAGATGAAGATTCGTTCAGGATGCAAATAAAAGAATTGGCATTCAAGTCTCTCCAACTTCTTAAGAAAGCTATATTTGACAAAGAGTGTGAGCCATTATTCTCCCTTGATATCTATGGACACATCATTGGCATGTTCGAACAGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTTTAGATGCTCTTGGTGAAGACTATTCTGTTTGTTGCCAAGGAACTGCTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTAGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAGAAGAGATAACTATCTCATATGTTGATGAAGACCTTCCTTTTGAAGAGAGACAAGCATCCCTTGCAGACTATGGTTTTAGATGCAGGTGTCCAAAGTGCATTGAAGAAGAGCCATAA 1473 0.4182 MEEPICPIDSSCQTQISALLSPPSTLQLQEYYNTLLSARHCSSITVKQDANFGKGVFAAMDFSDGDLVLRDQMLVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQGLRDSESHGCDVGSSSSLSKNFHEMDSSSEDEDQGTHQCGSGSSKDKIPLPEGVVESLMNGQLNLPFSKEFSLPPVVPCLGGCGEAYYCSTSCAEADWESSHSLLCTGERSDPAHREALLKFNKHANETNDIFILAAKAICFTILRYRKLKANCHEGKMKYDTSGDSNSYNASLLLEAWRPISMGHKRRWWDCVALPDDIDSSDEDSFRMQIKELAFKSLQLLKKAIFDKECEPLFSLDIYGHIIGMFEQNNLDLVVASPVEDYFLYIDDLKNPDKEEAEKITQPILDALGEDYSVCCQGTAFFPLQSCMNHSCSPNAKAFKRDEDRDGQATIIAVRPIRKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1172 490 ProSiteProfiles SET domain profile. 42 460 IPR001214 GO:0005515
Amo08g1172 490 CDD SET_SMYD 408 485 - -
Amo08g1172 490 Gene3D SET domain 382 489 IPR046341 -
Amo08g1172 490 SUPERFAMILY SET domain 33 485 IPR046341 -
Amo08g1172 490 MobiDBLite consensus disorder prediction 118 158 - -
Amo08g1172 490 SMART set_7 42 466 IPR001214 GO:0005515
Amo08g1172 490 MobiDBLite consensus disorder prediction 119 133 - -
Amo08g1172 490 Pfam SET domain 378 459 IPR001214 GO:0005515
Amo08g1172 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 489 IPR044237 GO:0008168
Amo08g1172 490 Gene3D - 134 221 - -
Amo08g1172 490 SUPERFAMILY HIT/MYND zinc finger-like 191 217 - -
Amo08g1172 490 Pfam MYND finger 188 216 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1172 Amo-Chr8 19369832 19373916 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo08g1172 SET 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1172 - - aip:107613919 1000.35