Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1165 ATGTCCAAAGAACATTTACCATATAGTTTTCTCAACATGTGCAAAGGTCCACAAGGAAAAGGGCATGCCTCAACAAGAGGAATAGCTTCTTCTTCTTCTACATGTTGTTGTGAGTTATGTGGATTAAGGGCTTCATTGTATTGCCATGCTGATGATGCATATCTATGTAGAAAATGTGACAGATGGGTTCATGAAGCAAATTTCTTGGCCCTTAGACACATTAGATGCTTTCTCTGCAACACATGCAGCAATCTCACAAGAAGATGTGTTATTGGTGCTTCATCAGAGGTTATTCTTCCTGTTAATATTCATCAGCAACCAATTATTAGAAGGCAACATGAAAACATCACTTTCTTTCCTAGCTGA 366 0.3825 MSKEHLPYSFLNMCKGPQGKGHASTRGIASSSSTCCCELCGLRASLYCHADDAYLCRKCDRWVHEANFLALRHIRCFLCNTCSNLTRRCVIGASSEVILPVNIHQQPIIRRQHENITFFPS* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1165 121 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 21 102 - -
Amo08g1165 121 CDD Bbox1_BBX-like 36 78 - -
Amo08g1165 121 PANTHER B-BOX ZINC FINGER PROTEIN 29 21 102 - -
Amo08g1165 121 SMART bboxneu5 32 78 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1165 Amo-Chr8 19320381 19321375 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1165 37 100 C2C2-CO-like Transcription Factor Family AT3G21890 61.538 3.08e-23 85.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1165 08 19320381 19321375 Amo13g1883 13 27947990 27948697 PCT
Amo13g1883 13 27947990 27948697 Amo08g1165 08 19320381 19321375 PCT