Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1164 ATGATCATGGAACCCCTATGTGAATTTTGTGGGGTTGTAAGAGCTGTGGTGTATTGCAAGTCAGATTCTGCGCGCCTATGCCTTAACTGTGATGCATCTGTGCACTCTTCCAATCCCCTGTCAAGCCGGCACGCGCGCTCTCTTCTCTGTGATCTCTGCTATTGCCATGCAGCTGTTGTTTGTTGTGTAGATCATAACATGTGTGTGTGTGAAGCCTGCGAATGGAAGCAGAATGAGTGCTTATTGAGGGGACATGGCCGCCTGCTGTTGAAGTTCTATACCGGTTGTCCTTCTTTTGAGGACTTGTCTAGGCTTTGGTCCTTTGTGTTTGATGCTAACTCCTCATGTGGTGATGGTTTGGAACCAATTAGTACAGTGTGTGTGGAAAAACCTGATAATGATGATGGTTTATTTGATTTGGTGAGTGACAAGTTGAATGAGATACAACCGTTCTTCAAATTCAAGCCTTGGACGGATCTGTCTCCCATGATTCCATCAAATCAAGATACCATGCAATTCTGCAAAGATCAAGCACTTTTTTCCCCTCCAGAATCAAACCAGCCAAAGGGATGTTCTAATTTCAACTATCTTGGAATCGATGAAGGAAATGGTTTATGTGAAGGTCTAACTGTGGATGGTGCATCATCATCAGTCCAACAAGATTTTGTAACCTTTCAATCTCCGAGCATGACGCCGACCTTCCACAGTAATGTGAATTGTGCTCTTGTGAGTCCTATTTACAACAGAGACATGAAACTTGGATTCCCTCAGGATCAAGTTCATTCCAGCATATCGATGGAATTATCCAACATTGCTGGAGACAGTAGTGCTACTGATCTAGCTTGTGAGTTGTCCAATGAGATACAATGCCCAGAGAGAAGGGCCAAAGCTAAAATGAGATACAATGAGAAAAACAAAACCCAAATGTTTGGCAAACAAATAAGATATGCATCTAAGAAAGCGAGGGCCAAGGCAAGAAAACGAGTGAAAGGTAGATTTGTTAAGACAGGAAGAAGAATATGA 1023 0.4282 MIMEPLCEFCGVVRAVVYCKSDSARLCLNCDASVHSSNPLSSRHARSLLCDLCYCHAAVVCCVDHNMCVCEACEWKQNECLLRGHGRLLLKFYTGCPSFEDLSRLWSFVFDANSSCGDGLEPISTVCVEKPDNDDGLFDLVSDKLNEIQPFFKFKPWTDLSPMIPSNQDTMQFCKDQALFSPPESNQPKGCSNFNYLGIDEGNGLCEGLTVDGASSSVQQDFVTFQSPSMTPTFHSNVNCALVSPIYNRDMKLGFPQDQVHSSISMELSNIAGDSSATDLACELSNEIQCPERRAKAKMRYNEKNKTQMFGKQIRYASKKARAKARKRVKGRFVKTGRRI* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1164 340 CDD Bbox1_BBX-like 6 49 - -
Amo08g1164 340 Pfam CCT motif 294 336 IPR010402 GO:0005515
Amo08g1164 340 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Amo08g1164 340 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 338 - -
Amo08g1164 340 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 4 338 - -
Amo08g1164 340 SMART bboxneu5 2 49 IPR000315 GO:0008270
Amo08g1164 340 ProSiteProfiles Zinc finger B-box type profile. 6 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1164 Amo-Chr8 19294491 19295906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1164 3 337 C2C2-CO-like Transcription Factor Family AT3G21880 33.073 5.71e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo08g1164 CCT 1.7e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1164 - - adu:107461934 645.966