Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1149 ATGCACGTAATGCATAGCATGAAAGCTGAGCTAAAAGGAGCATCTTCTATCTCCTTCCAAAACCACAGCCTCTTCAACACAGCACCACATAGTTCACTCACCGGAGCACTCAAAGGATGTCTCGGAAGCCTCGACGGCGCGTGCATCGAGAAGCTTCTTCTCCACTGCGCAAGCGCCTTGGAGAGCAACGATGTAACCTTGGCACAACAAGTGATGTGGGTCCTCAACAACGTTGCTTCACCAACCGGTGACACAAATCAAAGGCTCACATCATGGTTCCTCAGGGCACTGATCTCTAGGGCTTCAAGGATTTGCCCTACAGCCTTGAGTTTCAAGGGGAGTAGCAACAACATTCAGAGGAGGTTGATGACGGTTACCGAGCTAGCAGGATACGTGGATCTCATTCCATGGCACAGTTGCCAGAGGACAGAGTTCGAATCCGACATTGGACAGAAGATTGAGAACATCATAGGATATGAAGGGCATCATAGGATAGAGAGGTTGGAGTCAGGGATGCAGATGTGCCAGAGAATGAAGAATGCTGGTTACTTGAGCCTCCCATTTTGTGATGAAACGGTTATGGAAGTTAAGGGTTTGCTTGATGAGCATGCTAGTGGATGGGGGATGAAGAGGGAAGAAGGCATGTTGGTTCTCACATGGAAAGGAAACAGCTGTGTCTATGCCACTGCTTGGGTCCCCAGTGAAACCAGGGATCCTATTGGTTTCGATGCAACTATGGCATAA 744 0.4892 MHVMHSMKAELKGASSISFQNHSLFNTAPHSSLTGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTALSFKGSSNNIQRRLMTVTELAGYVDLIPWHSCQRTEFESDIGQKIENIIGYEGHHRIERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHASGWGMKREEGMLVLTWKGNSCVYATAWVPSETRDPIGFDATMA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1149 247 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 139 IPR005202 -
Amo08g1149 247 ProSiteProfiles GRAS family profile. 40 232 IPR005202 -
Amo08g1149 247 PANTHER OS05G0500600 PROTEIN 8 139 - -
Amo08g1149 247 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 233 IPR005202 -
Amo08g1149 247 Pfam GRAS domain family 137 231 IPR005202 -
Amo08g1149 247 PANTHER OS05G0500600 PROTEIN 140 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1149 Amo-Chr8 19120127 19121518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1149 139 233 GRAS Transcription Factor Family AT3G49950 46.392 6.94e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo08g1149 GRAS 2.3e-13 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1149 - - gmx:100802093 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0896 18 13187369 13189609 Amo08g1149 08 19120127 19121518 hybridization
Amo18g0531 18 7131743 7134263 Amo08g1149 08 19120127 19121518 hybridization