Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1141 ATGTTGGGGAAAGGGAACACGAAGGGGGATGGTGGATCGAAGTCGGTAGCAAAAATACTTGCAAAATGGAAAGAGTACAACGCACAGCTTGATTCAAGCAGCGACGCCGATAAACCGATTCGGAAGGTTCCGGCGAAGGGGTCGAAGAAGGGGTGTATGAAGGGAAAAGGGGGACCTGAGAATTCGCGGTGTAACTACCGGGGAGTGAGGCAGAGGACTTGGGGAAAATGGGTTGCCGAAATTCGAGAGCCCAACCGAGGCAGCAGGCTTTGGCTTGGAACTTTCCCGACCGCCATTGGTGCTGCCCTTGCCTATGACGAAGCTGCCCGCGCTATGTACGGTTCTTGTGCCCGCCTCAACTTCCCCAACGTCTCTGTCTCCAGTTTCTCCCACCATTCTTCTTCTCCGCCTGAAAACCACCACGATGATGATGTCATTTCGTTATCCTTAAGTGTAAAGCATGAGGCTGTGGAGGCTGAATCTGGGGCTAGTAACTCCCCTCCTTCTTCCTCCTGA 516 0.5329 MLGKGNTKGDGGSKSVAKILAKWKEYNAQLDSSSDADKPIRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSHHSSSPPENHHDDDVISLSLSVKHEAVEAESGASNSPPSSS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1141 171 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Amo08g1141 171 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Amo08g1141 171 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Amo08g1141 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 159 - -
Amo08g1141 171 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Amo08g1141 171 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Amo08g1141 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 159 - -
Amo08g1141 171 MobiDBLite consensus disorder prediction 30 64 - -
Amo08g1141 171 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Amo08g1141 171 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Amo08g1141 171 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1141 Amo-Chr8 18978473 18979898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1141 12 122 AP2-EREBP Transcription Factor Family AT2G40350 66.087 1.03e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo08g1141 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1141 - K09286 adu:107462080 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0903 18 13367057 13368345 Amo08g1141 08 18978473 18979898 hybridization