LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g1135	ATGCGAACTACTCTTGTAGTTTTCCTTGTTTCATTGCTGCAATGCACTTCTCAAGTGGTTGTAGCAAAAGATATTATGGAGTCTGGCCAAAACATAACTTCAGAATCTTCATCAAGCTTTCTTGTTTCAGCTGGACAGAGATTTGTACTAGGCTTCTTTCCTCGTCCCGAAAACACATCAGAAAGTTACCTGGGGATATGGTACAACACTAATCAAATACAATACCCTGGAAAACAAACAGTGGTATGGGTTGCCAACAGAGACATTCCTGTTGTGAGTTCCAATGTTGGAGTCTTTCATATTGCAGATGATGGAAACCTTGTACTAGAAGATGCATCGAGTAAACGACGCTATTGGTCCACATCAATAAGCTCTGCATCCACGGCGACGAACAAAACAAGGAGAGTGCAGCTAATGGATTCTGGGAATCTGGTATTGTTCCATGAAGAAGAAGATGGAGATTACATATGGCAAAGCTTCCAACACCCCACAGACACGTTTCTTCCGGGAATGCAGATGGACATGGATGGCATGGAATTAAGGAGTGGAAACTTCACCTTCAAGATGGTTCGGAAGAAGCGTTATGTCATCTACTTGAATGATCAACAACTCTATTGGGAAAATGATGGACTCAATTCAGATGCACTGAGCCCTGACAAACTCGAATATTTAACTAACTGGACAGACATCGATATCCCTACGTCTTCACGTACGAAAGGTGTGAATCGGACGATGAAACTTTCAGCCACTATGAACATATCCAGCACTGGGACCTGGGAAGCCTTGTATAAGAAATACATGAACACAAGAATTGTGATGAATTCTTCAGGGGAGATACAGTATCTGAAGTGGGAAGAGGAAGACTCTACAGGTGCAGGATGGACGATGTTATGGAGGCAGCCATCGGACAAGTGCCATATATATAATTTTTGCGGCAACTTTAGTAGCTGCGACATTGCAGATGATTCGAGGATCTGCAAATGTTTACCAGGGTTTAAGGAGAATCAGATTCAGAGCCATGAGGGAGGGTCCAGATTCCCAGGATGTAACAGAAGTACACTATCACTGTATGACAGCAGAGGCATGATGTTCATTAACTTGACCATGGTGAGAGTGACCGCACCAGACCTCAAATCCCTCGCAGAAAGCGAAGATGAATGCCGGATTTCGTGCCTTAACATGTATCTTCCCCGGTGCCAAGCTTATTCGTATAATGGCTCTGTTTCAGATTATGATCGTCTTCCTCTCACATGTGGAATTTGGACACAGGATTTAACTACTCTTCAAGTGGTCCAAGATGATGGTGCTGCTACTGCTTCTCTTTCTGTTCTGGTCAACCGTTCAGATATAGCACCAAAGGCAAAATCATGTGAGCCTTGTGGTATATACGTAATTCCTTATCCCCTAAGCACTGGACCAAGCTGTGGGGATGCCACCTACAACAAGTTCATCTGCAACAACTCAACAGGGCAGCTTAACTTCACAATCTCCGGTGGAGAATCGTACCGAGTTACTTGGGTAGACCAAAATACCAGAAGGTTTTACATTCAAACCAGCAATTCTTATCGCTGTGATTCCAGCAGTCAAAATAGAGTCCCTGATCCTCCCTTTAATGTCACCAACTGGTGCTACGGAGCAGATGAAATTGAGGTCAGTTGGGATCCAGCGCCAGAACCCCCCTGTAATCACCTCGCAGACTGCAATGATTGGCCTCATTCAACATGCCGACACAAATTTCATCCAGGGGAAAAGAGGTGCTTTTGCCATTCAAAATATCACTGGGATGCCTCAACTCTTACTTGTACTCAAGGAGAGGAATCAAAAAACCACAAATTGCTATTGGTTGTAACTCTTACCGTCATGCTTTTGCTAGCATTTCCAGTGATATTTGCATATGTATGGAGAATCAAGACAAACCCCAAGATTGACAGGGCGAACATTCTAATACAGGAGAGCTTGCATGATAGTGAAAGACAAGTCAAAGGTTTGATAGGCTTGGGAGGTTTAGAAGACAAACACAGTGAAAGCATTGCAGTGCCTTTTTATACTTACAGAAGCATTGTAGCAGCTACTGATAATTTCTCTGAGTCAAACAAGCTTGGAAGAGGAGGTTATGGACCAGTCTACAAGGGAAGGTTTCCCGGAGGCCAAGATATTGCTGTAAAAAGGCTTTCAAGTGTTTCAACACAAGGCTTAGAGGAATTCAAAAATGAGATTGTTTTGATTGCCAAACTCCAACATCGGAACCTTGTTAGACTCAGAGGCTATTGCATAAAGGGAGATGAGAAGATTTTACTTTATGAATACATGCCGAACAAGAGCTTGGACTCTTTCATCTTTGACCGTTCAAGAACTTTACTCCTTGAATGGCCAATGCGGTTTGACATAATCCTAGGCATTGCACGAGGATTGCTTTATCTTCACCAAGACTCTAGACTAAGAATAATTCATAGAGATCTAAAGTCTAGCAACATTCTTCTAGATGAGGATATGACTCCAAAGATTTCAGACTTCGGCCTTGCAAAAATATTTGGAGGGAAAGAGACCGAAGCAAGCACAGAGAGAGTTGTGGGAACCTACGGATATATGGCACCAGAATATGCTTTGGACGGGTATTTTTCAATCAAGTCCGATGTTTTCAGCTTTGGTGTAGTCTTATTAGAGATTCTCAGTGGAAAAAAGAACACAGGATTCTTTCAATTCAAACAAACTGCTACCCTTTTGGGATATGCATGGGGACTATGGACAGAGAATAGGCTTATGAATTTAATGGATACATCTTTCAGTGGAACTTGCAATGAGAATCAATTTACCAAGTGTGCACAAATTGCACTCTTGTGTGTGCAAGATGAACCAAGTGATCGACCAACCATGTCAACTGTTGTGACAATGCTTGATAGCGAAATTGCAACCATCCCTATTCCTACGCAACCAACATTTTATGCAATTAGAAGGACTACAAGCACTACTGCATCTTCTTCGAGCAGACCAGAAACAACCATGCAAATTGAGAGCAGTTATCAAGAAGGGAGATAG	3036	0.4256	MRTTLVVFLVSLLQCTSQVVVAKDIMESGQNITSESSSSFLVSAGQRFVLGFFPRPENTSESYLGIWYNTNQIQYPGKQTVVWVANRDIPVVSSNVGVFHIADDGNLVLEDASSKRRYWSTSISSASTATNKTRRVQLMDSGNLVLFHEEEDGDYIWQSFQHPTDTFLPGMQMDMDGMELRSGNFTFKMVRKKRYVIYLNDQQLYWENDGLNSDALSPDKLEYLTNWTDIDIPTSSRTKGVNRTMKLSATMNISSTGTWEALYKKYMNTRIVMNSSGEIQYLKWEEEDSTGAGWTMLWRQPSDKCHIYNFCGNFSSCDIADDSRICKCLPGFKENQIQSHEGGSRFPGCNRSTLSLYDSRGMMFINLTMVRVTAPDLKSLAESEDECRISCLNMYLPRCQAYSYNGSVSDYDRLPLTCGIWTQDLTTLQVVQDDGAATASLSVLVNRSDIAPKAKSCEPCGIYVIPYPLSTGPSCGDATYNKFICNNSTGQLNFTISGGESYRVTWVDQNTRRFYIQTSNSYRCDSSSQNRVPDPPFNVTNWCYGADEIEVSWDPAPEPPCNHLADCNDWPHSTCRHKFHPGEKRCFCHSKYHWDASTLTCTQGEESKNHKLLLVVTLTVMLLLAFPVIFAYVWRIKTNPKIDRANILIQESLHDSERQVKGLIGLGGLEDKHSESIAVPFYTYRSIVAATDNFSESNKLGRGGYGPVYKGRFPGGQDIAVKRLSSVSTQGLEEFKNEIVLIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTLLLEWPMRFDIILGIARGLLYLHQDSRLRIIHRDLKSSNILLDEDMTPKISDFGLAKIFGGKETEASTERVVGTYGYMAPEYALDGYFSIKSDVFSFGVVLLEILSGKKNTGFFQFKQTATLLGYAWGLWTENRLMNLMDTSFSGTCNENQFTKCAQIALLCVQDEPSDRPTMSTVVTMLDSEIATIPIPTQPTFYAIRRTTSTTASSSSRPETTMQIESSYQEGR*	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g1135	1011	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	16	1009	-	-
	Amo08g1135	1011	ProSiteProfiles	Bulb-type lectin domain profile.	33	159	IPR001480	-
	Amo08g1135	1011	SMART	blect_4	23	163	IPR001480	-
	Amo08g1135	1011	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	815	827	IPR008271	GO:0004672\|GO:0006468
	Amo08g1135	1011	Pfam	S-locus glycoprotein domain	249	335	IPR000858	GO:0048544
	Amo08g1135	1011	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	16	1009	-	-
	Amo08g1135	1011	ProSiteProfiles	PAN/Apple domain profile.	349	443	IPR003609	-
	Amo08g1135	1011	SUPERFAMILY	Protein kinase-like (PK-like)	677	1003	IPR011009	-
	Amo08g1135	1011	Pfam	Protein tyrosine and serine/threonine kinase	697	965	IPR001245	GO:0004672\|GO:0006468
	Amo08g1135	1011	Gene3D	Phosphorylase Kinase; domain 1	669	769	-	-
	Amo08g1135	1011	ProSiteProfiles	Protein kinase domain profile.	694	980	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo08g1135	1011	SMART	serkin_6	694	969	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo08g1135	1011	Pfam	D-mannose binding lectin	80	177	IPR001480	-
	Amo08g1135	1011	CDD	B_lectin	40	163	IPR001480	-
	Amo08g1135	1011	CDD	STKc_IRAK	700	966	-	-
	Amo08g1135	1011	Gene3D	-	17	161	IPR036426	-
	Amo08g1135	1011	Gene3D	Transferase(Phosphotransferase) domain 1	770	972	-	-
	Amo08g1135	1011	MobiDBLite	consensus disorder prediction	986	1011	-	-
	Amo08g1135	1011	SUPERFAMILY	alpha-D-mannose-specific plant lectins	80	209	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g1135	Amo-Chr8	18919370	18923817	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g1135	670	980	Receptor kinase-like Gene Family	AT4G23230	56.270	1.06e-119	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Amo08g1135		PK_Tyr_Ser-Thr	1.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g1135	-		-	ahf:112705270	2045.4