Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1130 ATGGTGAGAACCCCTTTGTGTGACAAGAGTGGAATGAGGAAGGGCACGTGGACACCTGAGGAAGACAAGAAGTTGGTCGCTTATGTTACTAGGTATGGTTGCTGGAATTGGCGTCTTCTCCCAAAGTTTGCAGGTCTTGAAAGGTGTGGCAAGAGTTGCAGACTTAGGTGGATGAACTACCTCAGACCCAACATCAAAAGAGGCAACTACACTCAAGAAGAAGAGGATACTATCATCACACTTCACCAAAACCTTGGCAATAGATGGTCCCTAATTGCGGCGAATTTACCAGGAAGAACTGATAACGAGATAAAGAATCACTGGCACACTGTTCTGAAGAAGCGTATTCAAGAAAAGTCGTCGTCATCGTCGTCGTCAGGCACAGGCAAAGGTAGTAGAACCGGAAAAGCTAAAGCTTCTTCCAAAGTAAAGAATAATGATAATAATAATTATGACTCCCCAACAACACTAATGGAACAAGATTTCAATAACATTGGTGCTAGTTGTGATGATCGTCGTCATAATAATAGCCCATTGTCTCCACAACCATCCTCTAGCGGTTTCTCTTGCGTAACAACAGATACTGAAACCGCCGCTATAAACCATGAGGATAATAATTTAATTATTCTAGAGAATAATAATAATGATTACGGCGAGCTTGGTTTCCTTGATGCATATGATGAGCCAGTGAGTGCAGATTTCTGGACAGAACCATATCTGATTGACTTTTCCTATGTCCCACCCAGTAGTGAAGAATACTTTCTTAACCCTATTTGGGATATAGAATTCTGGGGCCAGAATAGCTTATACCTGGAATGA 819 0.4188 MVRTPLCDKSGMRKGTWTPEEDKKLVAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWMNYLRPNIKRGNYTQEEEDTIITLHQNLGNRWSLIAANLPGRTDNEIKNHWHTVLKKRIQEKSSSSSSSGTGKGSRTGKAKASSKVKNNDNNNYDSPTTLMEQDFNNIGASCDDRRHNNSPLSPQPSSSGFSCVTTDTETAAINHEDNNLIILENNNNDYGELGFLDAYDEPVSADFWTEPYLIDFSYVPPSSEEYFLNPIWDIEFWGQNSLYLE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1130 272 CDD SANT 69 112 IPR001005 -
Amo08g1130 272 MobiDBLite consensus disorder prediction 117 190 - -
Amo08g1130 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo08g1130 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Amo08g1130 272 CDD SANT 16 61 IPR001005 -
Amo08g1130 272 MobiDBLite consensus disorder prediction 115 190 - -
Amo08g1130 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo08g1130 272 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo08g1130 272 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 241 - -
Amo08g1130 272 Gene3D - 14 66 - -
Amo08g1130 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo08g1130 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo08g1130 272 Gene3D - 68 150 - -
Amo08g1130 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo08g1130 272 SMART sant 13 63 IPR001005 -
Amo08g1130 272 SMART sant 66 114 IPR001005 -
Amo08g1130 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1130 Amo-Chr8 18855398 18856411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1130 1 165 MYB Transcription Factor Family AT2G31180 54.545 1.21e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g1130 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1130 K09422 - gmx:100778518 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1130 08 18855398 18856411 Amo03g0678 03 12500948 12502864 PCT
Amo13g1954 13 29408721 29410548 Amo08g1130 08 18855398 18856411 PCT
Amo03g0681 03 12552686 12554147 Amo08g1130 08 18855398 18856411 PCT