Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1100 ATGATCAGTTTCTGTAATTGTTTTGGGATAATCAAGAAAGGAAAAAATGAAAGGGCTAAGCAAAGTGTAAAAAAAATTTTCTCACGGGGACTGTTGCGTGGAGAAACAGAAGATGATTTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAAGTGACAGCCAGCCTCGAGCCAACCGATCGGAGGAAATTTTGAACTTGAGAGCAGAGAAGGACATGGCTTGTAGGCGGGTACCTGTTAAGGAGACCAACAAACTTGTTCGTGAAGAGGATGAAGATGGGAACAAAATGATCAATGAGTATGTTCGGGAGTACAGGATTGGTTCAGGTAGTTATGGCAAAGTGGTTCTATATCGAAGTATTGTAGATGGAAAGCATTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTGAAGCTTCGAGTTGCAGGCTCTGAGACCGCCATGTCTGACGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATTGCTTCTACATGGTGCTAGAATATGTGGAGGGCAAATGGTTTTGTGAGGGTTCAGGTCGTGGTTGTGCCTTGGTGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCGGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCCGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGACAATAATGATATACTTTATCGATCACCTGGCACGCCTGTTTTCTCTGCACCAGAATGTTGTGTAGGTGGTACGTATCATGGTAAAGCTTCAGACACATGGGCAGTTGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCATTTCTCGGAAAAACGCTTCCAGATACATATGAAAAAATAGTCAATAATCCATTAGTACTCCCGGATGACATTAACCCACAATTAAAGAACTTGATTGAAGGACTACTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGCTGGGTTATTGGAGATGATGGGCCCATCAGTGAATACTTGTGTTGGTGCAAACAGAAGAGGCTTCTGGTGGAACAAGAACACCACCCTTAG 1182 0.4129 MISFCNCFGIIKKGKNERAKQSVKKIFSRGLLRGETEDDFSYSGEFTSNTTSGDESDSQPRANRSEEILNLRAEKDMACRRVPVKETNKLVREEDEDGNKMINEYVREYRIGSGSYGKVVLYRSIVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKWFCEGSGRGCALVEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDNNDILYRSPGTPVFSAPECCVGGTYHGKASDTWAVGVTLYCMIMGEYPFLGKTLPDTYEKIVNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHSWVIGDDGPISEYLCWCKQKRLLVEQEHHP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1100 393 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Amo08g1100 393 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 2 390 - -
Amo08g1100 393 Pfam Protein kinase domain 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1100 393 SUPERFAMILY Protein kinase-like (PK-like) 101 379 IPR011009 -
Amo08g1100 393 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 2 390 - -
Amo08g1100 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Amo08g1100 393 Gene3D Transferase(Phosphotransferase) domain 1 95 390 - -
Amo08g1100 393 CDD STKc_LKB1_CaMKK 111 366 - -
Amo08g1100 393 SMART serkin_6 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1100 393 ProSiteProfiles Protein kinase domain profile. 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1100 393 MobiDBLite consensus disorder prediction 42 58 - -
Amo08g1100 393 MobiDBLite consensus disorder prediction 42 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1100 Amo-Chr8 18495954 18500618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1100 111 373 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 1.68e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Amo08g1100 Pkinase 4.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1100 K00908 - gmx:100776013 610.527