Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1095 ATGATGATGATGTCTTCATCAGAAGCCTTTTCATCATCACCATCAGCAGCAGCTCCTTCGAGTTCCAGCATCATCCATTACGGAAACCCTAATTCAATTCCAGGAGTAGCGAAGAGAAAGCGAAGTCAACCAGGAAGACCAGATCCAGAGGCAGAAGTAATAGCTCTATCACCAAAGTCGCTGATGGCAACAAACCGTTTCGTATGCGAGATATGCAAGAAAGGGTTCCAGAGGGACCAGAACCTACAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTTCGGCAGAGGGAGAAGGAGGAGGTGGTGCGGAAGAAGGTGTACGTATGTCCGGAGAAGAGCTGCGTCCACCACGAGAGTTCTCGTGCGCTGGGGGACTTGACGGGGATAAAGAAACACTACAGCAGAAAGCACGGCGAGAAGAAGCTGAAATGCGAAAAGTGCTCCAAGAAATACGCTGTTCACTCTGATTGGAAGGCTCATACCAAGATCTGTGGCACCAGAGAGTATCGTTGTCACTGTGGCACTCTCTTCTCCAGGAAGGACAGCTTCCTCACTCACAGATCTTTTTGTCAAGCCTTGCCTCAATTTCATACTGCTTCCATGCCACCACCATCACTACCACTATGGCTTGACCAAACAATCAACCAAGAGAACAAGGTCGGAGACTTGTTGTACTCATCATCATCATCCACACTCATGTCGGCCACTGCGTTGTTGCAGAAAGCTACACAAATGGAATCTACCCCCATGGCTTCTAACAACGACAATGCCTTTGTTGGATTCATGCTCAGCTCTTCGTCTCAGTTCTCCTCCTTCAATAACGATTCAAACTTGATGCAACACCCACTTGGGTTGACCAGAGACTTTCTTGGCGTTGGGGTCACCACCAAGTTCATGACTAATCCAATGGGATCCCTCCTCGACTTCCAAACCAATCCTCTTCATCATCATCAAGAATATATGTAG 972 0.4877 MMMMSSSEAFSSSPSAAAPSSSSIIHYGNPNSIPGVAKRKRSQPGRPDPEAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQREKEEVVRKKVYVCPEKSCVHHESSRALGDLTGIKKHYSRKHGEKKLKCEKCSKKYAVHSDWKAHTKICGTREYRCHCGTLFSRKDSFLTHRSFCQALPQFHTASMPPPSLPLWLDQTINQENKVGDLLYSSSSSTLMSATALLQKATQMESTPMASNNDNAFVGFMLSSSSQFSSFNNDSNLMQHPLGLTRDFLGVGVTTKFMTNPMGSLLDFQTNPLHHHQEYM* 324
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1095 323 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 196 - -
Amo08g1095 323 SMART c2h2final6 67 89 IPR013087 -
Amo08g1095 323 SMART c2h2final6 109 139 IPR013087 -
Amo08g1095 323 SMART c2h2final6 144 164 IPR013087 -
Amo08g1095 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Amo08g1095 323 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Amo08g1095 323 Gene3D Classic Zinc Finger 63 90 - -
Amo08g1095 323 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 196 - -
Amo08g1095 323 MobiDBLite consensus disorder prediction 1 50 - -
Amo08g1095 323 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Amo08g1095 323 Gene3D Classic Zinc Finger 101 193 - -
Amo08g1095 323 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo08g1095 Amo-Chr8 18459769 18461367 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1095 38 311 IDZ Gene Family AT4G02670 52.063 1.27e-101 302
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g1095 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1095 K25870 - adu:107461721 603.979