Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1090 ATGGGGAAAGAGCTTCTTGAGGAATTGGGAGCTGATGAAGAAGGAAATGGAAGAACACCTACAAAAACAACACCTCACATGTTCTGCAAGACACTCACAGCCTCTGATACAAGCACTCATGGTGGTTTCTCTGTTCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTATTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCGAGGCGGCATCTACTCACTACCGGATGGAGTATTTTCGTTAGCCAAAAGAATCTTGTGTCCGGTGATGCTGTGCTTTTCCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAGTCTATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCAGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGTAA 516 0.438 MGKELLEELGADEEGNGRTPTKTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1090 171 CDD B3_DNA 26 128 IPR003340 GO:0003677
Amo08g1090 171 Pfam B3 DNA binding domain 28 129 IPR003340 GO:0003677
Amo08g1090 171 ProSiteProfiles B3 DNA-binding domain profile. 28 130 IPR003340 GO:0003677
Amo08g1090 171 Gene3D - 26 130 IPR015300 -
Amo08g1090 171 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 171 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo08g1090 171 SMART B3_2 28 130 IPR003340 GO:0003677
Amo08g1090 171 SUPERFAMILY DNA-binding pseudobarrel domain 20 140 IPR015300 -
Amo08g1090 171 PANTHER AUXIN RESPONSE FACTOR 5 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1090 Amo-Chr8 18396442 18397757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1090 2 171 B3 DNA Binding Superfamily AT5G60450 84.706 5.19e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo08g1090 B3 9e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1090 - - ahf:112706773 350.903