Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1085 ATGACGCACTCTCTTCCCCTATATATAACCGCCTTTAGTCTCTGCCTTTGGCTTCCCACCACAACACACACCAAATATCCAAACCACAAAAACAAAAACAGAATGGAGGCAAGTGACACAAATACCCCTATTTCTTCTTCTCAGTCTCCAACATCCTCTTCTTCTCTTCCACCTCCGCCGCAGCCTACAGCAGCGCAAGTGATAATGAGCCCTTGCGCTGCTTGTAAAATTCTTCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTATTTTCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGAGTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAGGTGCAAGGATAAGAGATCCGGTTTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAAGTCAATGAGCTTCAAGCACAGTTAGCCAAGGCTCAAGCTGAGATTGCCAACATGCAGTTTCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGGCTAATAAGGCTACCGCCACCACACAAGAACCGCCACCGTCACCGCAACAATCGGTGGACAACTTCATTGCAAGCCCTCCTCACATCAACAATAATCTCAACTTCTTTGACGACAACACTAGCCTCAACTCCATGTGGGAGCTTTTTGGACATGACCATATCACTACGTTTTAA 747 0.4833 MTHSLPLYITAFSLCLWLPTTTHTKYPNHKNKNRMEASDTNTPISSSQSPTSSSSLPPPPQPTAAQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEIANMQFQQANMVALLYMQMAEANKATATTQEPPPSPQQSVDNFIASPPHINNNLNFFDDNTSLNSMWELFGHDHITTF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1085 248 Pfam Lateral organ boundaries (LOB) domain 71 168 IPR004883 -
Amo08g1085 248 Coils Coil 150 177 - -
Amo08g1085 248 MobiDBLite consensus disorder prediction 37 52 - -
Amo08g1085 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 239 - -
Amo08g1085 248 MobiDBLite consensus disorder prediction 195 214 - -
Amo08g1085 248 ProSiteProfiles LOB domain profile. 70 171 IPR004883 -
Amo08g1085 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 52 239 - -
Amo08g1085 248 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1085 Amo-Chr8 18264537 18266331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1085 36 229 AS2 family AT2G28500 59.694 2.50e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo08g1085 LOB 7.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1085 - - gmx:100789504 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0443 18 5878961 5880171 Amo08g1085 08 18264537 18266331 hybridization
Amo08g1085 08 18264537 18266331 Amo13g0343 13 4627531 4629721 PCT
Amo13g0343 13 4627531 4629721 Amo08g1085 08 18264537 18266331 PCT