Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1080 ATGGGCAGGCCAAGACAATCACCGCACAGGGCCGAGGGGATCCCTTCCAGAACACCGGAATCTCCATCCACAAATCCGTCATCAAAGCCGCACCCGGTCTCGTTCCTGTTTTGGACAAGGTTAAGGCCTTTCTTGGGCCGGCCCTGGCATCAGAACGCTAGGGTTGTTGTTATGAGGACTTATTTGGACTTTCTTATAAGCCCATTGGGCTGGGATGAATGGAATGGATCTGGGCCTGCTTCCGATACAAGCAAAAGAGTGAAGTGGCCCGGTTTTCATGTGATATCAAACCCAAAAGAGGCGTCACAATTCACTGTCACTTTTATTCTTGCTGGTCGCACCCAGGTCTCTGATTCTCATGTAGTTTGTTTTCAGCATTCATTCTTTTGTACATTTGAGCAAGCAAGAGAAACTATTTATGTATGCTAA 429 0.4755 MGRPRQSPHRAEGIPSRTPESPSTNPSSKPHPVSFLFWTRLRPFLGRPWHQNARVVVMRTYLDFLISPLGWDEWNGSGPASDTSKRVKWPGFHVISNPKEASQFTVTFILAGRTQVSDSHVVCFQHSFFCTFEQARETIYVC* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1080 142 Pfam Pectinesterase 42 111 IPR000070 GO:0030599|GO:0042545
Amo08g1080 142 SUPERFAMILY Pectin lyase-like 43 114 IPR011050 -
Amo08g1080 142 MobiDBLite consensus disorder prediction 1 30 - -
Amo08g1080 142 PANTHER PECTINESTERASE 41 121 - -
Amo08g1080 142 PANTHER PECTINESTERASE 41 121 - -
Amo08g1080 142 Gene3D - 38 129 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1080 Amo-Chr8 18225449 18226946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1080 41 121 Carbohydrate Esterase AT2G47550 42.105 4.38e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1080 K01051 - gmx:100800413 99.7525