Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1078 ATGGATCCTTCTAGTGGACAACACCATCAGGAACTGGAGAACATGATAGGATGCTCCACAAAGAGTCAGCAACAAGAGAGAAAGCCAAGGCCACAACCAGAACAAGCACTCAAATGTCCAAGATGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAATCTTGCAGAAGATACTGGACCAAAGGTGGAACACTCAGGAATGTTCCTGTTGGTGGTGGATGCAGGAAGAACAAGAGATCTTCTAATTCTTCTTCTTCATCAACTACTTCCTCTTCATCTAATTCACCTGCACCCTCTTCAAGGAGGCCTCAAGATCATCATGGATTCATCTCACCTAATAATCCTCTTATCACTTCTTTCCCTCACTTGGCTTATGATCATCATCCTTCTTCTTCTCCTACCAGTGATCTCACCTTAGCCCTTGCAAGGCTCCAGAAACAAACAATGCCTTTTGATGATCATGATCTCTCAATCTTGGGCAACCCCACAAGCTCCCTTTGTGATATTCTTGGAAATCAAGGCCTTAACACCCACAACACTTCATCAACTGGCTTCTTGGAAGCACTTAGAACCGGATTCCAAGGAAACAATAGTAATAATAACGCTCTTCATCATCAGAATCTCTACTATTCATATGGGAATGGGGACATGGGTGAGGTTGTGGACAATGGTGCTGTTAATGCTGGAGACATGTTGCTACCTAATCATTATGATTCAGAGATGAGCAATGCAGCAACTCAAGCAGTGAGTGTCAGCACCATGAAGCAAGAACTATGCAGTGAAGCTACTAAGGTTCTTGGTGGTGGCGCTTTTCCATGGCATAACAGTAGTAATGGGGACACAAACATGGGTGAATTTGATTCAGCAAGAGCTACTTGGAATGCTGGTTTCACATCTTCAAATTGGCATGGCCTTCTCCATAGTCCTCTAATGTAA 972 0.4372 MDPSSGQHHQELENMIGCSTKSQQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSNSSSSSTTSSSSNSPAPSSRRPQDHHGFISPNNPLITSFPHLAYDHHPSSSPTSDLTLALARLQKQTMPFDDHDLSILGNPTSSLCDILGNQGLNTHNTSSTGFLEALRTGFQGNNSNNNALHHQNLYYSYGNGDMGEVVDNGAVNAGDMLLPNHYDSEMSNAATQAVSVSTMKQELCSEATKVLGGGAFPWHNSSNGDTNMGEFDSARATWNAGFTSSNWHGLLHSPLM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1078 323 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Amo08g1078 323 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 6 322 - -
Amo08g1078 323 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Amo08g1078 323 MobiDBLite consensus disorder prediction 1 26 - -
Amo08g1078 323 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Amo08g1078 323 MobiDBLite consensus disorder prediction 1 38 - -
Amo08g1078 323 MobiDBLite consensus disorder prediction 81 125 - -
Amo08g1078 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 322 IPR045174 GO:0003700|GO:0006355
Amo08g1078 323 MobiDBLite consensus disorder prediction 88 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1078 Amo-Chr8 18182042 18183672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1078 1 197 C2C2-Dof Transcription Factor Family AT3G45610 46.829 1.67e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo08g1078 zf-Dof 6.9e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0438 18 5806442 5808019 Amo08g1078 08 18182042 18183672 hybridization
Amo08g1078 08 18182042 18183672 Amo13g0345 13 4667736 4669093 PCT
Amo13g0345 13 4667736 4669093 Amo08g1078 08 18182042 18183672 PCT