Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1068 ATGGCAAGCACGTACAACAACCTCAAGGATATTGAGGCATCTTCAGACCACTTAATATTGAGGATTAAAGTGAGAGTCGTGAAAATATGGTCATTGTCTCCTGCTGAGCAAAAATACGTGAAGCCAACTTTAGAGTTGGTGGTCATGGATCACGTGGGGGATCGAATCCAGTGCACTATTAGGAATGCTCAGAGGAGGCTCTTTGAAGATGAGTTATCAGAGGGAAAAATCTATATCGTTTGTAACTTCTCAACTTCCTTGAATGACCAGAAATACAAGGCCACTAACCATGCATGTAGGATATACTTCAAGAGGGATACTCAACTTCAGATGGTCCATGATCCATCCTTTCCGGAGAATGTGTTTCGTTTTGTTCCTAATGATCTAATATTGAACCACACAAATGCTCAGTCGCATCTTATAGATGTTATTGGTCTACTTACTGGCAAGGGTGACATAATTGAATTTACTAAGAATGGCAAGAAGTGCAGCTACATTGTTCTCGAGCTTGATGACATGCAGGGAAAAGGCAAGATTAGGTGTACACTTTGGGAGGATTTTGCAACTATGTTGGTCAAGCACATTGAAGAGCAACCAACATCAGAGTACATCATCATTGTACAGTTCGCTAAGTTCAACCTCTTTAAAGGTGCAATGGGCATATCAAATACCAATCATAATTCAATTCTCTACATCAATGCGGACTTCCAAGAGGTTAAGGATTTTCGCAAGAGCGTCGTCATGGCGGGGGTTCCACGTGCAAACCAACTATCCCAAATTGCTGCGGAGCCAGCGTACTCTATGGAGGACGATCTCATCAACGTCTCCATTTATAAACCCATTTCTGAACTCAAGGCATCCATTGAGGGTGGAGTAAATGAGGAATACCCAATAGAGCTGAATTCCTTTAGGGGTAAGAAATTCCTATTCAAGGTTTCTGTCAAGATGGAAGATCTAAATTCTTTCCAGCCTTGCAAGGTCATTGTGATGAAGATGACTGATGAGATATCGCTTATAACAAAATTTTTAGGAAAGCATGATATATACCAGCAAAACCTTGCACTGGAACACTCAGAACTGTTGAACATGCAAACTGCTTCCACCGACACGCCAAAGGGCACGGGTTCTCCTTCTGTTGTGGCTTTGGTGGACAACTCTAATGATGCTTTCTCAATCCCCAAGAGAAACATTATTAGTGGTGGATGCTCTAAGCGACTCATTGATCTTTATCCAGACTCTGCTAATGGATCATCATCGAAGTGTAGAAAGCTCGAAGATGGCATTCCCGGAGTTGATAGAGTCTACCAAGATTAG 1314 0.4201 MASTYNNLKDIEASSDHLILRIKVRVVKIWSLSPAEQKYVKPTLELVVMDHVGDRIQCTIRNAQRRLFEDELSEGKIYIVCNFSTSLNDQKYKATNHACRIYFKRDTQLQMVHDPSFPENVFRFVPNDLILNHTNAQSHLIDVIGLLTGKGDIIEFTKNGKKCSYIVLELDDMQGKGKIRCTLWEDFATMLVKHIEEQPTSEYIIIVQFAKFNLFKGAMGISNTNHNSILYINADFQEVKDFRKSVVMAGVPRANQLSQIAAEPAYSMEDDLINVSIYKPISELKASIEGGVNEEYPIELNSFRGKKFLFKVSVKMEDLNSFQPCKVIVMKMTDEISLITKFLGKHDIYQQNLALEHSELLNMQTASTDTPKGTGSPSVVALVDNSNDAFSIPKRNIISGGCSKRLIDLYPDSANGSSSKCRKLEDGIPGVDRVYQD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1068 437 CDD RPA1_DBD_A_like 21 107 - -
Amo08g1068 437 Gene3D - 116 251 IPR012340 -
Amo08g1068 437 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Amo08g1068 437 Gene3D - 6 114 IPR012340 -
Amo08g1068 437 CDD RPA1_DBD_B_like 142 246 - -
Amo08g1068 437 PANTHER REPLICATION FACTOR A 1, RFA1 20 289 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo08g1068 437 SUPERFAMILY Nucleic acid-binding proteins 136 246 IPR012340 -
Amo08g1068 437 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Amo08g1068 437 Gene3D - 267 342 IPR012340 -
Amo08g1068 437 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1068 Amo-Chr8 18016926 18031885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1068 48 243 Core DNA Replication Machinery Family AT2G06510 27.586 1.59e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1068 - - adu:107461640 856.67