Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1063 ATGACCTTTACTTTTGATGAGCTTGCAGCTGCAACAGGGAATTTCAGGCCTGATTGTTTTCTTGGTGAAGGAGGGTTTGGCAAGGTTTACAAGGGCCACTTGGAGAGCATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTCATGGCCTTCAAGGAATTAGGGAATTTGTTATAGAAGTTTTGACTTTGAGTTTGGTAGATCATCCTAATCTTGTCAAGTCGATTGGGTTTTGCGCCGAGGGAGATCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGCACCATTTACATGATCTTCCACCGGGAAAAAGACCGATAAGTTGGAATACAAGGATGAAAATCGCGGCCGGTGCAGCGAAGGGGTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATTTACCGTGATCTGAAATGCTCTAACATTTTGCTAGATGAGAAATATCATGCCAAATTGTCTGATTTCGGCTTAGCGAAAGTAGGCCCGAGTGGTGATAAGTCTCATGTTTCGACGAGGGTTATGGGCACATATGGTTATTGTGCTCCAGATTATGCAATGACGGGTCAGTTGACATTCAAGTCTGATATTTACAGCTTTGGTGTTGTTCTTTTGGAGCTCATCACAGGAAGGAAAGTCATTGACCATAGAAGACCTGAAAAGGAAGAAAATCTAGTTGCATGGGCAAGGCCTTTATTCAAAGACCGGAAAAGATTCTCAGAGATGGTTGATCCATTGCTTGAAGGTAAATATCCAGTGAGAGGCCTGTACCAAGCTCTTGCCATTGCCGCGATGTGTCTACAAGAGCAGCCTAATATGCGGCCTAACACGGCCGATGTGGTTACAGCTCTAGACTTCCTTGCTTCGCAGAAATACGATCCTTACACTCATCCAGTCTCAAAAAGTCCATCTCCAAATCGAAAAATGGATGACCAATGGTCTGTCCCAAGCACCGGTTCTGAGACAGAAAGGAGTGATGACCCCGAATGTTCTGTTAGAAATGGTTCTGAGATATGA 1032 0.4409 MTFTFDELAAATGNFRPDCFLGEGGFGKVYKGHLESINQVVAIKQLDPHGLQGIREFVIEVLTLSLVDHPNLVKSIGFCAEGDQRLLVYEYMPLGSLEHHLHDLPPGKRPISWNTRMKIAAGAAKGLEYLHDKMKPPVIYRDLKCSNILLDEKYHAKLSDFGLAKVGPSGDKSHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKVIDHRRPEKEENLVAWARPLFKDRKRFSEMVDPLLEGKYPVRGLYQALAIAAMCLQEQPNMRPNTADVVTALDFLASQKYDPYTHPVSKSPSPNRKMDDQWSVPSTGSETERSDDPECSVRNGSEI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1063 343 ProSiteProfiles Protein kinase domain profile. 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1063 343 PANTHER OS07G0668900 PROTEIN 2 308 - -
Amo08g1063 343 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Amo08g1063 343 Pfam Protein kinase domain 21 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1063 343 MobiDBLite consensus disorder prediction 327 343 - -
Amo08g1063 343 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 2 308 - -
Amo08g1063 343 MobiDBLite consensus disorder prediction 300 343 - -
Amo08g1063 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Amo08g1063 343 MobiDBLite consensus disorder prediction 300 326 - -
Amo08g1063 343 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Amo08g1063 343 SUPERFAMILY Protein kinase-like (PK-like) 3 318 IPR011009 -
Amo08g1063 343 SMART serkin_6 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1063 343 CDD STKc_IRAK 21 290 - -
Amo08g1063 343 Gene3D Transferase(Phosphotransferase) domain 1 92 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1063 Amo-Chr8 17994038 17996971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1063 2 294 Glycoside Hydrolase AT3G07070 66.894 1.36e-146 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo08g1063 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1063 - - gmx:100794680 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1063 08 17994038 17996971 Amo13g0359 13 4864459 4868063 PCT
Amo13g0359 13 4864459 4868063 Amo08g1063 08 17994038 17996971 PCT